CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3159.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.9 Ta.3159.1.S1_at BJ228678 - - 5e+0 At4g27880 seven in absentia (SINA) family protein S.X. H.G.
0.67 86.3 Ta.9377.3.S1_at CA599079 - - 6e+0 At5g63310 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) S.X. H.G.
0.60 81.0 Ta.2207.2.S1_a_at CA612248 - - 5e-25 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) S.X. H.G.
0.56 78.6 TaAffx.59779.1.S1_x_at CA595426 - - 2e-5 At5g41970 - S.X. H.G.
0.44 64.5 Ta.7274.3.S1_a_at AJ612375 - - 1e-3 At1g79650 RAD23 S.X. H.G.
0.44 64.5 Ta.30799.3.S1_a_at CA720672 - - 6e-2 At5g54580 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.42 60.9 Ta.7506.2.S1_a_at BJ267303 - - 5e-15 At1g27650 ATU2AF35A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.3 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.8 97.9 GSM298074 Crown tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.8 97.2 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-2 38 TaAffx.114925.1.S1_at CF133462 - - 5e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) C.G. S.X.
0.04 8e-2 38 Ta.10023.1.S1_at BJ236927 Ribosomal protein L30 - 4e+0 At4g21920 unknown protein C.G. S.X.
0.03 3e-1 36 TaAffx.64866.1.A1_at BJ271920 - - 3e-1 At3g45230 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 3e-1 36 TaAffx.114066.1.S1_at CA599372 - - 9e-2 At4g16140 proline-rich family protein C.G. S.X.
0.03 3e-1 36 Ta.7519.2.A1_x_at BJ224989 - - 2e-1 At5g61490 - C.G. S.X.
0.03 3e-1 36 Ta.4939.1.S1_at CA640242 - - 1e+0 At5g28630 glycine-rich protein C.G. S.X.
0.03 3e-1 36 Ta.4939.1.S1_x_at CA640242 - - 1e+0 At5g28630 glycine-rich protein C.G. S.X.
0.03 3e-1 36 Ta.10177.2.S1_at BJ305256 - - 1e+0 At5g43870 phosphoinositide binding C.G. S.X.
0.03 1e+0 34 TaAffx.54025.1.S1_at CA686678 - - 1e+0 At3g17160 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e+0 32 Arabidopsis thaliana At4g27880 828901 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:mitochondrion, nucleus;MPOF - - - C.G. S.X.
0.05 4e-1 36 Glycine max GmaAffx.44482.1.S1_at BE475065 - - 8e-20 At5g42560 abscisic acid-responsive HVA22 family protein C.G. S.X.
0.04 9e-3 40 Hordeum vulgare EBpi01_SQ003_I06_at EBpi01_SQ003_I06 - - 8e-1 At5g63740 zinc finger protein-related C.G. S.X.
0.05 6e-4 46 Oryza sativa Os08g0427900 AK109208.1 - Hin19 (Fragment) 5e-5 At5g37720 RNA and export factor-binding protein, putative C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.30743.5.A1_at CV244509 hypothetical protein - 2e-2 At3g61840 unknown protein C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1622137_at CF413644 - - 4e+0 At4g08260 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.9892.1.A1_at BM351413 - - 6e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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