CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.3075.2.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.2 Ta.3075.2.S1_x_at CA601469 - - 4e-14 At3g04600 tRNA synthetase class I (W and Y) family protein S.X. H.G.
0.80 92.2 Ta.3075.3.S1_a_at CA608966 - - 1e-3 At3g04600 tRNA synthetase class I (W and Y) family protein S.X. H.G.
0.73 89.1 TaAffx.81113.1.S1_s_at CA689395 - - 4e+0 At5g54190 PORA S.X. H.G.
0.61 82.0 Ta.3075.2.S1_at CA601469 - - 4e-14 At3g04600 tRNA synthetase class I (W and Y) family protein S.X. H.G.
0.50 72.4 TaAffx.77664.1.S1_at CA744550 - - 2e-58 At5g67380 CKA1 (CASEIN KINASE ALPHA 1) S.X. H.G.
0.35 49.8 Ta.9175.2.S1_a_at CA606017 - - 1e-6 At1g50370 serine/threonine protein phosphatase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 97.8 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
5.2 97.5 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM298085 Crown tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM298086 Crown tissue of Solstice at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.6 95.6 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.99 0 1828 Ta.3075.2.S1_at CA601469 - - 4e-14 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.44 4e-134 478 Ta.3075.3.S1_a_at CA608966 - - 1e-3 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.44 4e-134 478 Ta.3075.3.S1_x_at CA608966 - - 1e-3 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.15 3e-45 182 TaAffx.59071.1.S1_at CA608595 - - 5e-6 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.04 5e-4 46 Ta.3075.1.A1_at CA497208 - - 8e-15 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.04 8e-3 42 Ta.17282.1.S1_at CA619330 - - 6e-8 At2g20490 NOP10 C.G. S.X.
0.03 3e-2 40 TaAffx.78140.1.S1_at CA737007 - - 2e+0 At2g26020 PDF1.2b (plant defensin 1.2b) C.G. S.X.
0.02 3e-2 40 Ta.24550.1.S1_s_at BE426945 - - 3e+0 At5g17390 universal stress protein (USP) family protein C.G. S.X.
0.02 1e-1 38 TaAffx.78552.1.S1_x_at CA730941 - - 1e-1 At5g14440 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-14 79 Arabidopsis thaliana At3g04600 819617 tRNA synthetase class I (W and Y) family protein F:tryptophan-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:tryptophanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation;C:cytosol;BOAMFPV - - - C.G. S.X.
0.11 8e-16 85 Glycine max GmaAffx.88103.1.S1_at BU760747 - - 1e-19 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.67 0 1298 Hordeum vulgare Contig5970_at Contig5970 - - 2e-13 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.50 0 815 Oryza sativa Os12g0540900 AK102417.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2)(Tryptophan--tRNA ligase) (TrpRS) 3e-19 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.25 5e-17 89 Populus trichocarpa PtpAffx.143418.1.S1_at DN496436 hypothetical protein - 2e-43 At3g04600 tRNA synthetase class I (W and Y) family protein C.G. S.X.
0.03 9e-3 40 Vitis vinifera 1614762_at CF414632 - - 1e-2 At5g65207 unknown protein C.G. S.X.
0.03 3e-3 42 Zea mays Zm.6190.1.A1_at CD447053 - - 9e-8 At2g20490 NOP10 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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