Gene omics information

Query gene ID	Ta.30706.1.S1_at
Gene name	expansin EXPA6
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	S.X.	H.G.	Please select
0.76	90.1	TaAffx.111143.1.S1_at	CA647259	-	-	8e+0	At5g13910	LEP (LEAFY PETIOLE)	S.X.	H.G.	Please select
0.73	89.1	Ta.20986.1.S1_x_at	CA641147	-	-	4e+0	At2g05440	glycine-rich protein	S.X.	H.G.	Please select
0.71	88.0	TaAffx.65026.1.A1_at	BJ265948	-	-	4e+0	At5g17080	cathepsin-related	S.X.	H.G.	Please select
0.67	86.3	Ta.27235.1.S1_s_at	BT009580.1	-	-	3e+1	At5g15320	unknown protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.110993.1.A1_at	BJ284006	-	-	1e+0	At5g26740	unknown protein	S.X.	H.G.	Please select
0.64	83.6	Ta.13937.1.A1_at	BQ744333	-	-	5e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.63	83.1	Ta.14311.1.A1_at	BU099716	-	-	1e-3	At2g41660	MIZ1 (mizu-kussei 1)	S.X.	H.G.	Please select
0.57	79.2	Ta.1708.1.A1_at	BE445919	-	-	3e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	S.X.	H.G.	Please select
0.53	74.9	Ta.16452.1.S1_at	CA606615	-	-	3e+0	At5g20790	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
106.4	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
86.4	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
17.0	99.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
12.4	99.4	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
11.8	99.3	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.1	90.3	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.1	90.3	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-78	293	Ta.18703.1.S1_at	CA640998	-	-	9e-1	At3g22970	unknown protein	C.G.	S.X.	Please select
0.14	3e-15	83	Ta.30773.1.S1_at	AY543531.1	expansin EXPA5	-	7e-4	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.11	4e-11	69	Ta.21031.1.S1_at	AY543530.1	-	-	4e-5	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please select
0.12	6e-10	65	Ta.5046.1.S1_at	AY543535.1	expansin EXPA9	-	3e-24	At2g37640	EXP3	C.G.	S.X.	Please select
0.19	2e-9	63	Ta.1400.2.S1_a_at	BQ839416	-	-	1e-3	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.13	4e-8	59	Ta.30669.1.S1_at	AY543534.1	expansin EXPA8	-	1e-5	At2g37640	EXP3	C.G.	S.X.	Please select
0.05	4e-5	50	Ta.5567.1.S1_at	AY543529.1	expansin EXPA3	-	3e-18	At2g37640	EXP3	C.G.	S.X.	Please select
0.10	4e-5	50	Ta.24760.1.S1_at	AY485121.1	-	-	6e-11	At2g37640	EXP3	C.G.	S.X.	Please select
0.07	1e-1	38	Ta.1400.3.S1_a_at	CA731495	-	-	1e+0	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e+0	32	Arabidopsis thaliana	At2g03090	814838	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-2	42	Glycine max	GmaAffx.93176.1.S1_s_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.81	0	898	Hordeum vulgare	Contig18422_at	Contig18422	-	-	1e-1	At5g42900	unknown protein	C.G.	S.X.	Please select
0.39	9e-29	129	Oryza sativa	Os03g0156300	9631.m00529	-	Alpha-expansin OsEXPA20	2e+0	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-5	50	Populus trichocarpa	PtpAffx.42594.1.S1_at	CX658121	hypothetical protein	-	4e-23	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-2	40	Vitis vinifera	1619010_s_at	BQ794765	similar to expansin	-	4e-11	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.13	3e-16	85	Zea mays	Zm.9068.1.A1_at	BM337511	-	-	1e+0	At4g21620	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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