Gene omics information

Query gene ID	Ta.30653.1.S1_at
Gene name	hypothetical LOC543043
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.30653.1.S1_at	AJ606023.1	hypothetical LOC543043	-	9e-2	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	S.X.	H.G.	Please select
0.60	81.0	Ta.4480.2.S1_at	CA599963	-	-	1e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.119572.1.S1_at	BJ267765	-	-	4e+0	At3g09390	MT2A (METALLOTHIONEIN 2A)	S.X.	H.G.	Please select
0.40	58.4	Ta.6956.2.S1_x_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	S.X.	H.G.	Please select
0.29	39.2	Ta.6956.2.S1_at	BJ304062	-	-	5e+0	At5g36130	cytochrome P450 family	S.X.	H.G.	Please select
0.29	39.2	TaAffx.113398.1.S1_at	CA613502	-	-	3e-4	At1g18420	-	S.X.	H.G.	Please select
0.11	12.4	Ta.28561.2.S1_at	BJ244783	-	-	8e-1	At2g39520	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
29.1	99.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
18.0	99.7	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
16.5	99.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
8.6	98.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM138166	genotype G30 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5	96.9	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5	96.9	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1467	Ta.30653.1.A1_at	AJ606023.1	hypothetical LOC543043	-	9e-2	At2g33870	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	C.G.	S.X.	Please select
0.02	1e-1	38	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	4e-1	36	Ta.26722.1.A1_at	CD490947	-	-	9e-1	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.91897.1.S1_at	BJ294578	-	-	4e+0	At5g55210	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.64240.1.A1_at	BJ308543	-	-	4e+0	At2g18400	ribosomal protein L6 family protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.24880.1.S1_at	CA710595	-	-	9e-1	At4g04745	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.3402.1.S1_at	BJ211240	-	-	3e-6	At1g48420	D-CDES (D-CYSTEINE DESULFHYDRASE)	C.G.	S.X.	Please select
0.03	2e+0	34	Ta.18613.1.S1_s_at	CA639624	-	-	5e-1	At3g55646	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.12523.1.A1_at	BQ166082	-	-	1e+0	At5g35603	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-2	38	Arabidopsis thaliana	At2g33870	817957	ArRABA1h (Arabidopsis Rab GTPase homolog A1h)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.66646.1.S1_at	AW508932	-	-	4e-15	At5g09410	EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	S0000200068D04F1_s_at	S0000200068D04F1	-	-	2e-1	At4g13261	unknown protein	C.G.	S.X.	Please select
0.47	1e-57	224	Oryza sativa	Os03g0638000	AY224555.1	-	Centromere protein-like protein (Fragment)	1e+0	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	Ptp.6167.1.S1_at	DN485551	hypothetical protein	-	1e-10	At4g00050	UNE10 (unfertilized embryo sac 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	32	Vitis vinifera	1613954_at	BQ792886	hypothetical protein LOC100241102	-	3e+0	At4g37240	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9106.1.A1_at	BM336365	-	-	1e+0	At5g11960	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage