Gene omics information

Query gene ID	Ta.3064.3.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.0	Ta.3064.3.S1_a_at	CA629476	-	-	1e+0	At3g47710	bHLH family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.460.1.S1_a_at	BG908990	-	-	1e-4	At4g16580	catalytic	S.X.	H.G.	Please select
0.44	64.5	Ta.12104.2.S1_a_at	CA633742	-	-	1e-21	At5g53350	CLPX	S.X.	H.G.	Please select
0.38	54.7	Ta.28628.1.A1_at	BQ162670	-	-	6e+0	At3g22260	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.36	51.9	Ta.3329.1.S1_at	BJ210428	-	-	8e-1	At4g23410	TET5 (TETRASPANIN5)	S.X.	H.G.	Please select
0.33	46.9	Ta.17892.1.S1_at	BJ217605	-	-	8e-4	At3g54360	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.3	GSM143525	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.8	97.2	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM143512	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143513	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	0	674	Ta.3064.1.S1_x_at	CA661911	-	-	2e-5	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	C.G.	S.X.	Please select
0.32	0	674	Ta.3064.1.S1_at	CA661911	-	-	2e-5	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.15908.1.S1_at	CA500345	-	-	2e-1	At4g12930	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.90055.1.S1_x_at	BQ609014	-	-	3e-1	At1g62240	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.90055.1.S1_at	BQ609014	-	-	3e-1	At1g62240	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.57311.1.S1_at	CA632164	-	-	1e+0	At3g47710	bHLH family protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.128871.1.S1_at	CA631950	-	-	1e-1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.14389.1.S1_at	BQ904163	-	-	3e+0	At2g11773	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.93209.1.A1_at	BJ219443	-	-	4e+0	At5g48240	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g47710	823925	bHLH family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	GmaAffx.27925.1.S1_at	BI498691	-	-	3e-1	At5g61590	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.36	7e-176	615	Hordeum vulgare	Contig4875_at	Contig4875	-	-	1e-2	At2g47700	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.31	2e-86	319	Oryza sativa	Os05g0154600	AK104006.1	-	The start codon is not identified.	1e-2	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	36	Populus trichocarpa	PtpAffx.218336.1.S1_at	pmrna33908	hypothetical protein	-	6e+0	At4g33380	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	32	Vitis vinifera	1611941_at	CF201800.1	-	-	3e+0	At5g53200	TRY (TRIPTYCHON)	C.G.	S.X.	Please select
0.32	4e-38	157	Zea mays	Zm.8939.1.A1_at	BM334228	-	-	8e+0	At3g43490	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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