Gene omics information

Query gene ID	Ta.30600.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	94.4	Ta.30600.1.S1_at	BJ291893	-	-	4e+0	At3g57500	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.25779.1.S1_at	CD373896	-	-	7e+0	At5g03010	kelch repeat-containing protein	S.X.	H.G.	Please select
0.35	49.8	Ta.21253.1.S1_at	CA609166	-	-	7e-2	At1g28170	sulfotransferase family protein	S.X.	H.G.	Please select
0.29	39.2	Ta.25712.1.S1_at	CD374009	-	-	1e-1	At3g42310	unknown protein	S.X.	H.G.	Please select
0.26	33.6	TaAffx.113545.1.S1_at	CD871079	-	-	2e+0	At3g27350	unknown protein	S.X.	H.G.	Please select
0.26	33.6	TaAffx.38100.1.A1_at	BJ250181	-	-	4e+0	At3g01185	unknown protein	S.X.	H.G.	Please select
0.22	27.1	TaAffx.36368.1.S1_at	CA719008	-	-	7e+0	At4g13261	unknown protein	S.X.	H.G.	Please select
0.20	24.0	Ta.4244.1.A1_at	BJ262725	-	-	1e+0	At3g23280	zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.4	99.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
22.0	99.8	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
20.5	99.7	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
16.5	99.6	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
15.5	99.6	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
15.0	99.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
11.3	99.3	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
11.0	99.3	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
10.2	99.2	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	8e-14	77	TaAffx.108935.1.S1_at	CA678256	-	-	4e+0	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	C.G.	S.X.	Please select
0.13	2e-8	59	TaAffx.113763.1.S1_at	CA605494	-	-	4e+0	At4g09840	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	38	Ta.20202.1.A1_x_at	CA604861	-	-	4e+0	At3g30370	-	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.59584.2.S1_x_at	CA704832	-	-	9e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.59584.1.S1_at	CA598591	-	-	4e+0	At1g07770	RPS15A (ribosomal protein s15a)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.52385.2.S1_x_at	CA710284	-	-	5e-5	At3g62730	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.52385.2.S1_s_at	CA710284	-	-	5e-5	At3g62730	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.119240.1.S1_at	CA678732	-	-	2e+0	At3g51500	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.5627.1.S1_at	AJ613206	-	-	5e-1	At5g57000	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g57500	824917	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	PsAffx.CL2069Contig1_at	PsAffx.CL2069Contig1	-	-	6e+0	At5g08640	FLS (FLAVONOL SYNTHASE)	C.G.	S.X.	Please select
0.70	0	692	Hordeum vulgare	Contig21103_at	Contig21103	-	-	1e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.44	1e-109	397	Oryza sativa	Os07g0621800	AK071704.1	-	Zinc-containing alcohol dehydrogenase superfamilyprotein	7e-1	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	44	Populus trichocarpa	PtpAffx.58733.1.A1_at	CK093090	hypothetical protein	-	1e+0	At4g22110	alcohol dehydrogenase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e-2	36	Vitis vinifera	1612093_at	CA811490	-	-	2e-26	At3g62250	UBQ5 (ubiquitin 5)	C.G.	S.X.	Please select
0.10	5e-10	63	Zea mays	Zm.4033.1.A1_at	CF636055	hypothetical protein LOC100273217	-	5e-2	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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