Gene omics information

Query gene ID	Ta.3057.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	92.7	Ta.3057.1.S1_at	BJ214808	-	-	3e+0	At1g04800	glycine-rich protein	S.X.	H.G.	Please select
0.58	79.2	TaAffx.49165.1.S1_x_at	CA640875	-	-	2e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	S.X.	H.G.	Please select
0.46	66.8	Ta.27026.1.S1_s_at	BT008919.1	-	-	1e+1	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	S.X.	H.G.	Please select
0.44	64.5	Ta.6439.1.A1_x_at	BJ311211	-	-	3e+0	At5g57150	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.44	64.5	Ta.27758.1.A1_at	CD913153	-	-	5e+0	At5g64780	-	S.X.	H.G.	Please select
0.42	60.9	Ta.20364.1.S1_at	CA679058	-	-	1e+1	At4g03170	DNA binding	S.X.	H.G.	Please select
0.41	59.6	Ta.9630.2.S1_at	CA691213	-	-	2e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select
0.41	59.6	Ta.7861.2.S1_a_at	CA692192	-	-	9e-1	At4g19640	ARA7	S.X.	H.G.	Please select
0.39	56.1	Ta.22953.1.S1_a_at	BJ247849	-	-	9e+0	At5g48540	33 kDa secretory protein-related	S.X.	H.G.	Please select
0.38	54.7	Ta.18914.3.A1_at	CA666584	-	-	4e+0	At5g59500	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	3e-176	619	Ta.3057.2.S1_a_at	CA666141	-	-	1e+0	At4g33145	unknown protein	C.G.	S.X.	Please select
0.40	3e-176	619	Ta.3057.2.S1_x_at	CA666141	-	-	1e+0	At4g33145	unknown protein	C.G.	S.X.	Please select
0.43	3e-136	486	Ta.3057.3.A1_at	CA613050	-	-	4e+0	At5g26594	ARR24 (Arabidopsis response regulator 24)	C.G.	S.X.	Please select
0.34	4e-92	339	TaAffx.106937.1.S1_at	CA708817	-	-	2e+1	At5g40810	cytochrome c1, putative	C.G.	S.X.	Please select
0.23	5e-39	163	TaAffx.30245.1.S1_at	CA616485	-	-	4e+0	At4g35360	pantothenate kinase family protein	C.G.	S.X.	Please select
0.01	7e-1	36	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.50856.1.S1_at	BJ249981	-	-	5e+0	At3g29170	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.23402.1.S1_at	CA735564	-	-	1e+1	At5g20220	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.12998.3.S1_at	BJ211963	-	-	1e+0	At5g23420	HMGB6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At1g04800	839406	glycine-rich protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	HgAffx.5913.1.S1_at	CD747901	-	-	2e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select
0.74	0	825	Hordeum vulgare	Contig5498_at	Contig5498	-	-	3e+0	At5g15970	KIN2	C.G.	S.X.	Please select
0.48	3e-66	254	Oryza sativa	Os07g0548900	NM_185747.1	-	Hypothetical protein	7e+0	At5g62490	ATHVA22B	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.212587.1.S1_at	pmrna24662	hypothetical protein	-	3e-1	At5g67140	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	32	Vitis vinifera	1618054_at	CF415389	hypothetical protein LOC100263127	-	5e-15	At3g63200	PLP9 (PATATIN-LIKE PROTEIN 9)	C.G.	S.X.	Please select
0.38	3e-44	178	Zea mays	Zm.6974.1.A1_at	BM078279	hypothetical protein LOC100276561	-	8e-1	At5g57887	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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