Gene omics information

Query gene ID	Ta.30501.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.30501.1.S1_at	CK205943	-	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.91	98.2	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.91	98.2	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.83	93.4	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	S.X.	H.G.	Please select
0.83	93.4	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.77	90.8	TaAffx.15327.1.S1_at	AJ610775	Glucan endo-1,3-beta-D-glucosidase	-	3e+0	At2g22850	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.5	99.6	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
15.8	99.6	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.7	99.5	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.2	99.5	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
13.9	99.5	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
13.4	99.5	GSM143503	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.7	99.3	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.6	99.3	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.4	99.3	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.3	99.3	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	993	Ta.2784.1.A1_at	AB029934.1	chitinase 1	-	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.23	2e-19	97	Ta.5873.3.S1_x_at	CD904673	-	-	6e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.22	7e-19	95	Ta.1929.1.S1_at	CK212185	-	-	4e-5	At2g43610	glycoside hydrolase family 19 protein	C.G.	S.X.	Please select
0.31	4e-17	89	Ta.26983.1.A1_at	CD454207	-	-	4e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.16	4e-17	89	Ta.26340.1.A1_at	CK198901	-	-	4e-1	At4g01700	chitinase, putative	C.G.	S.X.	Please select
0.17	1e-14	81	Ta.5873.2.S1_at	CD902597	-	-	5e-1	At3g23830	GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.22	1e-14	81	Ta.5873.1.S1_x_at	CD910379	-	-	5e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.19	1e-14	81	Ta.5592.1.S1_at	BJ285949	-	-	2e-2	At2g43570	chitinase, putative	C.G.	S.X.	Please select
0.19	4e-11	69	Ta.2783.1.S1_at	AB029935.1	chitinase 2	-	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-3	44	Arabidopsis thaliana	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	PsAffx.CL475Contig1_at	PsAffx.CL475Contig1	-	-	3e-1	At2g33520	-	C.G.	S.X.	Please select
0.76	0	1213	Hordeum vulgare	Contig2992_s_at	Contig2992	-	-	4e-5	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.57	4e-139	496	Oryza sativa	Os10g0542900	BM038035	-	Chitinase (EC 3.2.1.14) (Fragment)	3e-5	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.220631.1.S1_at	pmrna37041	hypothetical protein	-	7e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	36	Vitis vinifera	1608033_at	CF405913	-	-	4e+0	At5g10000	ATFD4 (ferredoxin 4)	C.G.	S.X.	Please select
0.20	1e-9	63	Zea mays	Zm.16805.3.S1_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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