Gene omics information

Query gene ID	Ta.30411.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.30411.1.S1_at	CK209297	-	-	5e+0	At5g62280	unknown protein	S.X.	H.G.	Please select
0.80	92.2	TaAffx.78517.1.S1_at	CA731451	-	-	4e+0	At2g25720	unknown protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	S.X.	H.G.	Please select
0.44	64.5	TaAffx.51594.1.S1_at	CA723204	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.7	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.8	99.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.4	99.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.4	99.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	40	TaAffx.28460.1.S1_at	CA659855	-	-	4e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please select
0.01	2e-2	40	Ta.5177.3.S1_a_at	CK208859	-	-	7e-39	At5g13110	G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.80472.1.S1_at	CA696628	-	-	4e+0	At3g01700	AGP11	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.80516.1.S1_at	CA695830	-	-	3e-1	At1g54870	binding / catalytic/ oxidoreductase	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.70742.1.S1_at	BQ800902	-	-	1e-2	At3g55460	SCL30	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.54677.1.S1_at	CA678421	-	-	2e+1	At1g09140	SF2/ASF-like splicing modulator (SRP30)	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.105982.1.S1_s_at	CA727042	transcription factor VP-1 homologue	-	2e-1	At5g19800	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Ta.42.1.S1_at	AB047554.1	-	-	5e-6	At3g24650	ABI3 (ABA INSENSITIVE 3)	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.26042.1.S1_at	CA608417	-	-	2e+0	At3g60260	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g62280	836349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.C10000031_s_at	PsAffx.C10000031	-	-	2e-1	At3g16510	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	1e-1	36	Hordeum vulgare	Contig20696_at	Contig20696	-	-	4e+0	At2g42190	unknown protein	C.G.	S.X.	Please select
0.32	6e-32	139	Oryza sativa	Os04g0413900	AK100104.1	-	-	2e-1	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.18875.1.A1_at	CV253276	hypothetical protein	-	6e+0	At5g20120	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	30	Vitis vinifera	1618386_at	BQ800555	-	-	4e-1	At1g63105	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.16934.1.A1_at	AY108912.1	transcriptional regulatory protein algP	-	3e-1	At4g03580	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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