Gene omics information

Query gene ID	Ta.29930.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.29930.1.S1_at	BJ273225	-	-	5e+0	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	S.X.	H.G.	Please select
0.73	89.1	TaAffx.129081.2.S1_s_at	CA608630	-	-	2e-2	At4g32714	SCRL25 (SCR-Like 25)	S.X.	H.G.	Please select
0.44	64.5	Ta.424.1.S1_at	CA644335	-	-	5e+0	At4g02370	unknown protein	S.X.	H.G.	Please select
0.43	62.2	TaAffx.71016.1.A1_at	BE424472	-	-	1e+0	At3g22930	calmodulin, putative	S.X.	H.G.	Please select
0.33	46.9	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.26	33.6	Ta.16082.2.S1_at	CK211295	-	-	2e+0	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	99.5	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
13.1	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.0	99.4	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.2	99.4	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.8	99.3	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.9	99.1	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.8	98.7	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.9	98.4	GSM143510	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.4	98.2	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.3	98.2	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	5e-139	494	TaAffx.129081.2.S1_s_at	CA608630	-	-	2e-2	At4g32714	SCRL25 (SCR-Like 25)	C.G.	S.X.	Please select
0.52	5e-139	494	TaAffx.129081.2.S1_at	CA608630	-	-	2e-2	At4g32714	SCRL25 (SCR-Like 25)	C.G.	S.X.	Please select
0.10	4e-16	85	TaAffx.30729.1.S1_at	CA622593	-	-	1e+0	At4g32714	SCRL25 (SCR-Like 25)	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.105913.1.S1_at	CA727912	-	-	3e-1	At2g29590	thioesterase family protein	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.79534.1.S1_at	CA713404	-	-	2e-1	At3g15610	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.04	5e+0	32	Ta.666.1.A1_at	BE499016	-	-	3e-1	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select
0.02	5e+0	32	Ta.26250.1.A1_at	CD491681	-	-	1e+0	At2g18490	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Ta.13937.1.A1_at	BQ744333	-	-	5e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.98097.1.A1_at	BQ168990	-	-	4e+0	At3g53500	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g60500	836171	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	F:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;BOFMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	Gma.5170.1.A1_at	BQ628737	-	-	5e-9	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select
0.72	0	654	Hordeum vulgare	Contig12026_at	Contig12026	-	-	3e-2	At4g32714	SCRL25 (SCR-Like 25)	C.G.	S.X.	Please select
0.20	3e-21	103	Oryza sativa	Os02g0437200	AK065640.1	-	SNAP-34	1e+0	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.215178.1.S1_s_at	pmrna29222	hypothetical protein	-	3e-120	Atmg00513	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	36	Vitis vinifera	1613679_at	BQ798757	-	-	7e-5	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	C.G.	S.X.	Please select
0.42	3e-64	244	Zea mays	Zm.9079.1.A1_at	CN844993	hypothetical protein LOC100217287	-	6e-3	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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