CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.29457.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 89.8 Ta.29457.1.S1_at CK205969 - - 1e-18 At4g30020 subtilase family protein S.X. H.G.
0.50 72.4 Ta.9117.1.A1_a_at BJ216810 - - 2e+0 At1g51010 unknown protein S.X. H.G.
0.40 58.4 Ta.30565.2.S1_s_at BJ310870 - - 2e+0 At5g35520 MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE) S.X. H.G.
0.29 39.2 Ta.29552.1.S1_x_at BE446813 - - 6e-1 At1g18650 PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3) S.X. H.G.
0.27 35.6 Ta.2807.1.A1_s_at CD886096 - - 1e+0 At3g06040 ribosomal protein L12 family protein S.X. H.G.
0.17 19.8 Ta.9117.1.A1_at BJ216810 - - 2e+0 At1g51010 unknown protein S.X. H.G.
0.08 9.4 Ta.7135.3.A1_a_at BJ322018 - - 2e-1 At4g17980 anac071 (Arabidopsis NAC domain containing protein 71) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 99.1 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
9.4 99.1 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
8.8 98.9 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.5 98.9 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.8 98.7 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.7 98.7 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
7.4 98.6 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.9 98.4 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.6 98.3 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.5 98.3 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-6 54 TaAffx.87333.1.S1_at CA502095 - - 6e+0 At5g26848 unknown protein C.G. S.X.
0.02 4e-6 54 TaAffx.82929.1.S1_at CA664766 - - 2e+1 Atmg01100 - C.G. S.X.
0.02 4e-6 54 TaAffx.66587.1.S1_at BG909343 - - 2e+0 At1g02620 GTP-binding protein (SAR1A) C.G. S.X.
0.02 4e-6 54 TaAffx.128800.1.S1_at BG313254 - - 1e-10 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) C.G. S.X.
0.02 4e-6 54 TaAffx.112019.1.S1_at BM135768 - - 2e+1 At5g14105 unknown protein C.G. S.X.
0.02 4e-6 54 Ta.8602.1.S1_x_at CA678271 - - 2e-4 At5g09220 AAP2 (AMINO ACID PERMEASE 2) C.G. S.X.
0.01 4e-6 54 Ta.7562.1.S1_at CK195662 - - 6e-2 At1g76260 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 4e-6 54 Ta.7305.1.S1_at BQ171898 - - 9e-1 At5g19960 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 4e-6 54 Ta.6777.3.A1_a_at CA605335 - - 5e-4 At4g30480 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-18 95 Arabidopsis thaliana At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM - - - C.G. S.X.
0.14 1e-9 65 Glycine max Gma.7222.2.S1_at AW759469 - - 8e-18 At4g30020 subtilase family protein C.G. S.X.
0.82 0 1955 Hordeum vulgare Contig12129_at Contig12129 - - 2e-14 At4g30020 subtilase family protein C.G. S.X.
0.53 0 1076 Oryza sativa Os06g0700000 AK102835.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e-53 At2g19170 SLP3 C.G. S.X.
0.18 7e-30 133 Populus trichocarpa PtpAffx.225099.1.S1_at pmrna44197 hypothetical protein - 3e-109 At4g30020 subtilase family protein C.G. S.X.
0.02 3e-4 46 Vitis vinifera 1618386_at BQ800555 - - 4e-1 At1g63105 unknown protein C.G. S.X.
0.44 3e-159 561 Zea mays Zm.10200.1.A1_at BM379455 hypothetical protein LOC100274487 - 4e-6 At4g30020 subtilase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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