Gene omics information

Query gene ID	Ta.28997.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.28997.1.A1_at	BQ169867	-	-	1e+0	At2g41835	zinc finger (C2H2 type, AN1-like) family protein	S.X.	H.G.	Please select
0.91	98.2	Ta.12636.3.S1_at	CA654694	-	-	4e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	S.X.	H.G.	Please select
0.91	98.2	Ta.12636.1.S1_s_at	BJ237568	-	-	2e-1	At3g14700	-	S.X.	H.G.	Please select
0.83	93.4	Ta.12636.3.S1_x_at	CA654694	-	-	4e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	S.X.	H.G.	Please select
0.67	86.3	TaAffx.108295.1.S1_s_at	BQ743485	-	-	1e+0	At5g46020	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.94593.1.S1_at	CA733739	-	-	1e-1	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.9	99.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
36.2	99.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
34.1	99.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM246392	SB109_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
6.3	98.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.1	98.1	GSM246398	SB3_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.4	97.7	GSM246388	SB10_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.1	97.5	GSM246389	SB10_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	2e-150	531	Ta.12636.2.S1_x_at	CA659089	-	-	2e+0	At2g41835	zinc finger (C2H2 type, AN1-like) family protein	C.G.	S.X.	Please select
0.47	2e-150	531	Ta.12636.2.S1_at	CA659089	-	-	2e+0	At2g41835	zinc finger (C2H2 type, AN1-like) family protein	C.G.	S.X.	Please select
0.34	4e-124	444	Ta.12636.1.S1_s_at	BJ237568	-	-	2e-1	At3g14700	-	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.6111.1.S1_at	AJ603054	-	-	2e+0	At5g16290	acetolactate synthase small subunit, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.6111.1.S1_x_at	AJ603054	-	-	2e+0	At5g16290	acetolactate synthase small subunit, putative	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.28936.1.S1_s_at	CA674614	-	-	6e-2	At5g28530	FRS10 (FAR1-related sequence 10)	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.25319.2.A1_a_at	BJ274496	-	-	2e-1	At2g41040	methyltransferase-related	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.25319.2.A1_x_at	BJ274496	-	-	2e-1	At2g41040	methyltransferase-related	C.G.	S.X.	Please select
0.04	5e+0	32	TaAffx.883.1.A1_at	CA729192	-	-	4e+0	At4g04614	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At2g41835	818783	zinc finger (C2H2 type, AN1-like) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.4322.3.S1_at	BM892775	-	-	3e-3	At5g12850	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.63	1e-69	262	Hordeum vulgare	HT08F04u_s_at	HT08F04u	-	-	3e+0	At5g49380	-	C.G.	S.X.	Please select
0.18	2e-16	87	Oryza sativa	Os06g0155300	AK099462.1	-	IQ calmodulin-binding region domain containingprotein	5e-2	At3g15050	IQD10 (IQ-domain 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.220796.1.S1_at	pmrna37234	hypothetical protein	-	2e-1	At1g60815	RALFL7 (RALF-LIKE 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	30	Vitis vinifera	1616735_at	CF604749	hypothetical protein LOC100257315	-	1e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	C.G.	S.X.	Please select
0.03	9e+0	30	Zea mays	ZmAffx.1019.1.A1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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