Gene omics information

Query gene ID	Ta.28850.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.2	Ta.28850.1.S1_at	BJ262711	-	-	1e-167	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	S.X.	H.G.	Please select
0.73	89.1	Ta.7608.1.S1_x_at	CD452795	-	-	7e-5	At2g17200	ubiquitin family protein	S.X.	H.G.	Please select
0.63	83.1	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	S.X.	H.G.	Please select
0.50	72.4	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	S.X.	H.G.	Please select
0.50	72.4	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	S.X.	H.G.	Please select
0.35	49.8	Ta.21374.2.S1_at	CK208435	-	-	8e-66	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	94.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6	92.9	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM111231	genotype B33 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM111251	genotype A35 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM111221	genotype H23 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM111245	genotype G13 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	9e-107	389	TaAffx.7295.1.S1_at	CA683289	-	-	4e+0	At5g18920	unknown protein	C.G.	S.X.	Please select
0.15	1e-87	325	TaAffx.7295.2.S1_at	CA662724	-	-	7e-2	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	C.G.	S.X.	Please select
0.08	9e-27	123	TaAffx.112549.1.S1_at	CA623060	-	-	3e-12	At3g53230	cell division cycle protein 48, putative / CDC48, putative	C.G.	S.X.	Please select
0.10	1e-13	79	TaAffx.53049.1.S1_at	CA697209	-	-	4e+0	At5g14010	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	3e-5	52	Ta.30798.3.S1_at	CK193564	-	-	1e-9	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.01	4e-4	48	Ta.1709.1.S1_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	C.G.	S.X.	Please select
0.01	4e-4	48	Ta.1709.1.S1_x_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	C.G.	S.X.	Please select
0.02	2e-3	46	Ta.25112.1.A1_at	CA602848	-	-	3e-1	At1g79610	sodium proton exchanger, putative (NHX6)	C.G.	S.X.	Please select
0.01	2e-3	46	Ta.1709.2.S1_a_at	CA611032	-	-	6e-57	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	1e-167	591	Arabidopsis thaliana	At3g09840	820142	CDC48 (CELL DIVISION CYCLE 48)	Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	8e-142	506	Glycine max	Gma.4013.1.S1_at	U20213.1	plamsma membrane-associated AAA-ATPase	-	0	At5g03340	cell division cycle protein 48, putative / CDC48, putative	C.G.	S.X.	Please select
0.41	0	860	Hordeum vulgare	Contig2036_s_at	Contig2036	-	-	8e-18	At3g53230	cell division cycle protein 48, putative / CDC48, putative	C.G.	S.X.	Please select
0.73	0	2482	Oryza sativa	Os03g0151800	AK098980.1	-	Cell division control protein 48 homolog A(AtCDC48a)	0	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	9e-117	422	Populus trichocarpa	Ptp.4616.1.S1_at	BP924637	hypothetical protein	-	0	At5g03340	cell division cycle protein 48, putative / CDC48, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	2e-77	289	Vitis vinifera	1610290_at	CD720110	-	-	2e-132	At5g03340	cell division cycle protein 48, putative / CDC48, putative	C.G.	S.X.	Please select
0.69	0	1739	Zea mays	Zm.1177.1.S1_at	AY105040.1	hypothetical protein LOC100274218	-	3e-112	At5g03340	cell division cycle protein 48, putative / CDC48, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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