Gene omics information

Query gene ID	Ta.28766.2.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	Ta.28766.2.S1_s_at	CD492036	-	-	2e-13	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	S.X.	H.G.	Please select
0.77	90.8	Ta.16101.1.S1_at	CA598926	-	-	8e+0	At4g12730	FLA2 (FASCICLIN-LIKE ARABINOGALACTAN 2)	S.X.	H.G.	Please select
0.73	89.1	Ta.28766.3.S1_at	CA610853	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	S.X.	H.G.	Please select
0.50	72.4	Ta.23129.1.S1_x_at	CA624439	-	-	2e+1	At2g10608	unknown protein	S.X.	H.G.	Please select
0.43	62.2	Ta.28139.2.S1_x_at	CA635297	-	-	2e+1	At3g10460	self-incompatibility protein-related	S.X.	H.G.	Please select
0.40	58.4	Ta.30401.3.S1_x_at	CA599168	-	-	3e+0	At1g06980	unknown protein	S.X.	H.G.	Please select
0.36	51.9	Ta.25350.2.S1_a_at	CA639373	-	-	3e-1	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
53.2	99.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
40.9	99.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
32.1	99.9	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
29.1	99.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
24.3	99.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
22.2	99.8	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.4	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	1318	Ta.28766.1.S1_x_at	CN011869	-	-	3e-12	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.75	0	1318	Ta.28766.1.S1_at	CN011869	-	-	3e-12	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.67	0	1237	Ta.28766.3.S1_at	CA610853	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.44	0	636	TaAffx.15847.4.S1_at	BQ803123	-	-	1e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.45	1e-150	533	TaAffx.15847.3.S1_at	BQ802374	-	-	5e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.44	4e-150	531	Ta.29462.1.A1_x_at	CK214572	-	-	2e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.44	4e-150	531	Ta.29462.1.A1_at	CK214572	-	-	2e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.44	4e-150	531	Ta.29462.1.A1_a_at	CK214572	-	-	2e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.43	7e-124	444	Ta.29462.2.A1_at	CD492051	-	-	3e-2	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-13	77	Arabidopsis thaliana	At4g25820	828687	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	4e-9	63	Glycine max	Gma.16471.1.S1_at	BQ298739	-	-	8e-19	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	C.G.	S.X.	Please select
0.78	0	1065	Hordeum vulgare	Contig2669_at	Contig2669	-	-	8e-13	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.57	0	710	Oryza sativa	Os06g0697000	AK120345.1	-	Xyloglucan endotransglucosylase/hydrolase proteinA precursor (EC 2.4.1.207) (VaXTH1)	3e-12	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-15	85	Populus trichocarpa	Ptp.6778.1.S1_s_at	CN520892	hypothetical protein	-	3e-23	At4g14130	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	3e-9	61	Vitis vinifera	1619068_at	CF215954	hypothetical protein LOC100250461	-	1e-13	At4g14130	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	C.G.	S.X.	Please select
0.46	1e-169	595	Zea mays	Zm.8890.1.S1_a_at	BM379881	hypothetical protein LOC100191584	-	1e-8	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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