Gene omics information

Query gene ID	Ta.28749.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Ta.28749.1.S1_a_at	CK213968	-	-	2e-59	At2g44610	RAB6A	S.X.	H.G.	Please select
0.67	86.3	Ta.23753.2.S1_at	CK170677	-	-	4e-2	At3g27380	SDH2-1	S.X.	H.G.	Please select
0.62	82.3	Ta.24991.1.S1_x_at	CK214927	cytosolic glyceraldehyde-3-phosphate dehydrogenase GAPDH	-	4e-120	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.53	74.9	Ta.9617.1.S1_at	CD871450	-	-	8e-50	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	S.X.	H.G.	Please select
0.50	72.4	Ta.27578.1.S1_at	CN013235	-	-	1e-43	At3g02090	mitochondrial processing peptidase beta subunit, putative	S.X.	H.G.	Please select
0.48	69.0	Ta.3152.1.S1_at	BJ253666	-	-	3e-161	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	S.X.	H.G.	Please select
0.48	69.0	Ta.24945.1.S1_at	BJ317763	phosphoglycerate kinase	-	6e-73	At1g79550	PGK (PHOSPHOGLYCERATE KINASE)	S.X.	H.G.	Please select
0.47	67.9	Ta.28740.1.S1_at	CD866215	-	-	2e-156	At5g08530	CI51 (51 kDa subunit of complex I)	S.X.	H.G.	Please select
0.45	65.2	Ta.12803.1.S1_x_at	CA674406	-	-	3e-5	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	S.X.	H.G.	Please select
0.38	54.7	Ta.24916.3.S1_x_at	CA630515	-	-	8e-2	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	97.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM138186	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.9	88.9	GSM138181	genotype A35 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.9	88.9	GSM138189	genotype F38a developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.9	88.9	GSM111190	genotype G32 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-88	327	Ta.28749.3.S1_a_at	CA697673	-	-	9e-17	At2g44610	RAB6A	C.G.	S.X.	Please select
0.18	7e-41	169	TaAffx.10744.1.S1_at	CD899249	-	-	5e-7	At2g44610	RAB6A	C.G.	S.X.	Please select
0.03	1e-2	42	Ta.1763.2.S1_x_at	BJ226675	-	-	6e-10	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.03	1e-2	42	Ta.1763.2.S1_at	BJ226675	-	-	6e-10	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.02	7e-1	36	Ta.25563.1.S1_at	CD454106	-	-	3e-12	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	C.G.	S.X.	Please select
0.01	3e+0	34	Ta.11209.1.S1_at	CK162793	-	-	7e-1	At4g18980	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	Ta.11035.1.A1_at	BQ168420	-	-	1e+1	At5g47870	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	32	TaAffx.8564.1.S1_at	CA623409	-	-	4e+0	At5g02220	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	32	TaAffx.6499.2.S1_at	CA684588	-	-	4e+0	At1g48330	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	2e-59	230	Arabidopsis thaliana	At2g44610	819069	RAB6A	Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	2e-85	317	Glycine max	Gma.3568.1.S1_x_at	BI941735	-	-	1e-54	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	C.G.	S.X.	Please select
0.81	0	1193	Hordeum vulgare	Contig7349_at	Contig7349	-	-	1e-66	At2g44610	RAB6A	C.G.	S.X.	Please select
0.50	0	775	Oryza sativa	Os07g0496000	AK111986.1	-	Nt-rab6 protein	9e-68	At2g44610	RAB6A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.43	2e-32	141	Populus trichocarpa	PtpAffx.205177.1.S1_at	pmrna10251	hypothetical protein	-	4e-93	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-57	222	Vitis vinifera	1621785_at	CF213480	hypothetical protein LOC100242004	-	2e-101	At2g44610	RAB6A	C.G.	S.X.	Please select
0.56	0	837	Zea mays	Zm.8122.1.A1_at	BM736458	hypothetical protein LOC100274535	-	4e-73	At2g44610	RAB6A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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