CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.28736.1.S1_at

Gene name inducible phenylalanine ammonia-lyase

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.0 Ta.28736.1.S1_at AY005474.1 inducible phenylalanine ammonia-lyase - 3e-14 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) S.X. H.G.
0.46 66.8 Ta.13798.1.S1_at CK161291 - - 2e-8 At3g19450 ATCAD4 S.X. H.G.
0.43 62.2 Ta.14435.1.S1_at BU099502 - - 1e-5 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) S.X. H.G.
0.38 54.7 Ta.13275.1.S1_at BQ166293 - - 1e-5 At2g46225 ABIL1 (Abi-1-like 1) S.X. H.G.
0.30 40.9 Ta.5227.3.S1_a_at CK171474 - - 1e-49 At3g17390 MTO3 (METHIONINE OVER-ACCUMULATOR 3) S.X. H.G.
0.28 39.2 Ta.20769.1.S1_at CK194353 - - 3e-4 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) S.X. H.G.
0.24 30.3 Ta.20769.1.S1_x_at CK194353 - - 3e-4 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) S.X. H.G.
0.19 22.4 Ta.1376.1.S1_at CD868146 - - 9e+0 At5g19830 aminoacyl-tRNA hydrolase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 98.4 GSM246388 SB10_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
6.8 98.4 GSM246389 SB10_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
6.5 98.3 GSM246398 SB3_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
5.6 97.8 GSM343686 Wheat var. Kennedy_Fp inoculated_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.3 97.6 GSM246392 SB109_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
5.3 97.6 GSM246385 SB165_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.8 97.2 GSM246395 SB69_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.8 97.2 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.4 96.8 GSM246399 SB3_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.4 96.8 GSM246397 SB57_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-147 523 TaAffx.58182.1.S1_at CA621698 - - 2e-3 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.44 2e-145 517 Ta.7022.1.S1_x_at BJ281221 - - 7e-11 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.41 2e-145 517 Ta.7022.1.S1_s_at BJ281221 - - 7e-11 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.41 2e-145 517 Ta.7022.1.S1_at BJ281221 - - 7e-11 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.41 7e-123 442 Ta.1465.1.S1_at CD878122 phenylalanine ammonia lyase - 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.21 2e-114 414 TaAffx.7248.1.S1_at CA664031 - - 3e-13 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.21 2e-114 414 TaAffx.7248.1.S1_x_at CA664031 - - 3e-13 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.27 1e-87 325 TaAffx.45277.1.S1_x_at BJ231180 - - 1e-14 At3g53260 PAL2 C.G. S.X.
0.35 4e-84 313 Ta.9220.1.S1_a_at CK210556 - - 1e-9 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-14 81 Arabidopsis thaliana At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA - - - C.G. S.X.
0.13 3e-18 95 Glycine max Gma.2266.1.S1_s_at BG839284 - - 2e-48 At2g37040 pal1 (Phe ammonia lyase 1) C.G. S.X.
0.85 0 3814 Hordeum vulgare Contig1797_x_at Contig1797 - - 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.68 0 2226 Oryza sativa Os02g0626400 BI807677 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.15 3e-18 95 Populus trichocarpa PtpAffx.2272.1.S1_a_at AY372451.1 phenylalanine amonnia lyase - 1e-49 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.14 1e-38 161 Vitis vinifera 1610206_at CF511227 hypothetical protein LOC100241377 - 2e-29 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
0.54 5e-168 591 Zea mays Zm.15903.3.A1_at AY104679.1 hypothetical protein LOC100273579 - 4e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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