Gene omics information

Query gene ID	Ta.28728.3.S1_at
Gene name	Plasma membrane intrinsic protein
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.28728.3.S1_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	S.X.	H.G.	Please select
0.88	94.4	Ta.28728.3.S1_x_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	S.X.	H.G.	Please select
0.69	86.9	Ta.5377.1.S1_at	CD452952	-	-	3e-4	At5g38820	amino acid transporter family protein	S.X.	H.G.	Please select
0.61	82.0	Ta.3443.2.S1_x_at	BJ207862	-	-	3e+0	At1g15580	IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)	S.X.	H.G.	Please select
0.53	74.9	Ta.28364.1.S1_x_at	AY543630.1	Plasma membrane H+-ATPase	-	1e-97	At4g30190	AHA2	S.X.	H.G.	Please select
0.46	66.8	Ta.3443.1.S1_x_at	CA665711	-	-	8e-6	At1g22050	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	S.X.	H.G.	Please select
0.38	54.7	TaAffx.85922.1.S1_s_at	CA618396	-	-	3e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	S.X.	H.G.	Please select
0.38	54.7	Ta.28364.1.S1_at	AY543630.1	plasma membrane H+-ATPase	-	1e-97	At4g30190	AHA2	S.X.	H.G.	Please select
0.37	53.0	Ta.7832.1.S1_at	CA646083	-	-	9e-2	At2g04900	unknown protein	S.X.	H.G.	Please select
0.32	44.4	TaAffx.29973.1.S1_at	CA631418	-	-	2e+0	At5g61410	RPE	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.6	GSM143501	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM143495	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2	96.6	GSM143498	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1	96.4	GSM143496	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.8	96.0	GSM143500	Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM143494	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM143491	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	2022	Ta.28728.3.S1_x_at	BJ284035	Plasma membrane intrinsic protein	-	3e-31	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.56	0	1261	Ta.28728.2.S1_x_at	BJ283978	-	-	1e-39	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.46	0	728	Ta.28728.1.S1_at	AF139815.1	-	-	2e-23	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.46	0	728	Ta.28728.1.S1_x_at	AF139815.1	-	-	2e-23	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	C.G.	S.X.	Please select
0.43	8e-146	517	Ta.1013.1.S1_at	AF139814.1	-	-	2e-17	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.33	2e-85	317	Ta.1848.1.S1_s_at	BJ263716	-	-	1e-24	At4g00430	PIP1	C.G.	S.X.	Please select
0.22	3e-56	220	Ta.5234.1.S1_x_at	CA605896	-	-	7e-12	At3g54820	PIP2	C.G.	S.X.	Please select
0.20	3e-53	210	Ta.1848.2.S1_x_at	BJ230034	Aquaporin 1:2	-	2e-21	At4g00430	PIP1	C.G.	S.X.	Please select
0.20	3e-53	210	Ta.1848.2.S1_s_at	BJ230034	Aquaporin 1:2	-	2e-21	At4g00430	PIP1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	3e-31	137	Arabidopsis thaliana	At2g37180	818294	RD28 (RESPONSIVE TO DESICCATION 28)	a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	4e-28	127	Glycine max	Gma.11116.4.S1_s_at	CD408430	-	-	4e-39	At4g35100	PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)	C.G.	S.X.	Please select
0.61	0	1275	Hordeum vulgare	Contig1223_at	Contig1223	aquaporin	-	6e-38	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.54	0	989	Oryza sativa	Os04g0521100	9632.m04226	-	Plasma membrane intrinsic protein (Aquaporin)	1e-42	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	3e-35	151	Populus trichocarpa	PtpAffx.7681.1.A1_at	CV271115	-	-	7e-38	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	3e-44	178	Vitis vinifera	1615808_s_at	CF211264	aquaporin-like	-	8e-53	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.53	0	763	Zea mays	Zm.600.1.S1_at	AY243802.1	plasma membrane intrinsic protein	-	9e-34	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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