CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.28673.1.S1_at

Gene name Vacuolar ATPase subunit F

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.28673.1.S1_at BJ286336 Vacuolar ATPase subunit F - 3e-15 At4g02620 vacuolar ATPase subunit F family protein S.X. H.G.
0.67 86.3 Ta.13231.1.S1_at BJ286554 vacuolar proton ATPase subunit E - 7e-35 At4g11150 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) S.X. H.G.
0.60 81.0 Ta.23895.1.S1_x_at CK205337 - - 3e-55 At4g34720 AVA-P1 S.X. H.G.
0.50 72.4 Ta.4403.1.S1_at BJ283628 - - 1e-41 At2g25610 H+-transporting two-sector ATPase, C subunit family protein S.X. H.G.
0.40 58.4 Ta.6591.3.S1_a_at CA646755 - - 1e+0 At1g73910 ATARP4A (Actin-related proteins 4A) S.X. H.G.
0.35 49.8 Ta.1892.1.S1_at CK163495 Vacuolar ATPase subunit G - 2e-6 At4g23710 VAG2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.8 93.6 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
2.6 92.9 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
2.6 92.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
2.5 92.5 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4 92.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4 92.0 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.4 92.0 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.4 92.0 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.3 91.5 GSM250912 TcLr34_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.0 89.7 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 6e-112 404 TaAffx.109547.1.S1_at CA673272 - - 7e-2 At2g22475 GEM (GL2-EXPRESSION MODULATOR) C.G. S.X.
0.33 6e-72 272 TaAffx.80938.1.S1_at CA690976 - - 1e-3 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.36 2e-65 250 Ta.17926.1.A1_at CA625898 - - 3e-13 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.22 9e-37 155 TaAffx.58543.1.S1_at CA621413 - - 2e-8 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.01 4e-2 40 Ta.16799.1.S1_at CA612909 - - 2e-7 At1g78440 ATGA2OX1 (gibberellin 2-oxidase 1) C.G. S.X.
0.01 6e-1 36 Ta.8767.1.S1_a_at BJ241108 - - 3e-3 At4g36980 unknown protein C.G. S.X.
0.01 6e-1 36 Ta.8767.1.S1_at BJ241108 - - 3e-3 At4g36980 unknown protein C.G. S.X.
0.02 6e-1 36 Ta.24605.1.S1_at BQ170504 - - 2e+0 At1g54215 proline-rich family protein C.G. S.X.
0.02 2e+0 34 TaAffx.90244.1.S1_at BQ606010 - - 1e+0 At5g57150 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-15 83 Arabidopsis thaliana At4g02620 828221 vacuolar ATPase subunit F family protein F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA - - - C.G. S.X.
0.16 2e-17 91 Glycine max Gma.7097.1.S1_at BG047373 - - 5e-47 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.68 0 1031 Hordeum vulgare Contig4136_at Contig4136 - - 2e-28 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.35 4e-68 260 Oryza sativa Os01g0759900 AK103020.1 - Permease 1 3e-16 At2g34190 xanthine/uracil permease family protein C.G. S.X.
0.22 7e-23 109 Populus trichocarpa Ptp.1975.1.S1_at CV281968 hypothetical protein - 2e-31 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1612240_at CF414518 hypothetical protein LOC100263579 - 4e+0 At5g05990 mitochondrial glycoprotein family protein / MAM33 family protein C.G. S.X.
0.33 8e-97 353 Zea mays Zm.6205.1.A1_at CK985870 vacuolar ATP synthase subunit F - 2e-18 At4g02620 vacuolar ATPase subunit F family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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