Gene omics information

Query gene ID	Ta.28670.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.28670.1.S1_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	S.X.	H.G.	Please select
0.74	89.4	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	S.X.	H.G.	Please select
0.61	82.0	Ta.2307.1.S1_at	X15233.1	phosphoglycerate kinase	-	1e-92	At1g56190	phosphoglycerate kinase, putative	S.X.	H.G.	Please select
0.55	76.8	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	S.X.	H.G.	Please select
0.55	76.8	Ta.1161.1.S1_at	BJ261576	-	-	4e-2	At2g17240	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	S.X.	H.G.	Please select
0.40	58.4	Ta.28361.2.S1_x_at	CK216267	-	-	8e+0	At4g01150	unknown protein	S.X.	H.G.	Please select
0.39	56.1	Ta.28361.2.S1_at	CK216267	-	-	8e+0	At4g01150	unknown protein	S.X.	H.G.	Please select
0.39	56.1	Ta.24304.2.S1_a_at	CK212788	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	S.X.	H.G.	Please select
0.39	56.1	TaAffx.15726.1.S1_at	CA722542	-	-	7e+0	At3g44180	syntaxin-related family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	99.2	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.1	98.5	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	1861	Ta.28670.1.S1_x_at	CA625828	-	-	4e-33	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.53	5e-131	468	Ta.15720.1.S1_at	CA486506	-	-	1e-28	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.45	5e-88	325	TaAffx.128551.1.S1_at	BJ266492	-	-	1e-14	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.02	1e-2	42	Ta.11341.1.S1_at	BQ169885	-	-	8e-3	At4g19200	proline-rich family protein	C.G.	S.X.	Please select
0.01	4e-2	40	Ta.211.1.S1_at	U76384.1	o-methyltransferase	-	8e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please select
0.02	7e-1	36	TaAffx.115902.1.S1_at	CA661952	-	-	4e+0	At5g64780	-	C.G.	S.X.	Please select
0.03	7e-1	36	TaAffx.106572.1.S1_at	CA715932	-	-	8e-1	At5g44450	methyltransferase	C.G.	S.X.	Please select
0.01	3e+0	34	TaAffx.129078.1.S1_at	CD880745	-	-	2e-4	At5g53540	MSP1 protein, putative / intramitochondrial sorting protein, putative	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.108248.1.S1_at	CA690398	-	-	5e+0	At5g10625	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	4e-33	143	Arabidopsis thaliana	At3g63410	825516	APG1 (ALBINO OR PALE GREEN MUTANT 1)	Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	1e-6	56	Glycine max	Gma.1938.1.S1_a_at	AW350096	-	-	2e-59	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.74	0	1610	Hordeum vulgare	Contig2893_at	Contig2893	-	-	4e-30	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.61	0	961	Oryza sativa	Os12g0615400	AK104295.1	-	37 kDa inner envelope membrane protein,chloroplast precursor (E37)	2e-23	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	3e-19	97	Populus trichocarpa	Ptp.2550.1.S1_at	BP934737	hypothetical protein	-	1e-70	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	8e-10	63	Vitis vinifera	1608777_at	CB344861	hypothetical protein LOC100266496	-	6e-19	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select
0.54	2e-147	521	Zea mays	Zm.2855.1.A1_at	BM351276	inner envelope membrane protein	-	6e-23	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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