Gene omics information

Query gene ID	Ta.28628.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.0	Ta.28628.1.A1_at	BQ162670	-	-	6e+0	At3g22260	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.75	89.8	Ta.8189.1.S1_at	BQ161562	-	-	3e-12	At5g51020	CRL (CRUMPLED LEAF)	S.X.	H.G.	Please select
0.57	79.2	Ta.10795.1.S1_at	BQ483940	-	-	6e-1	At1g28580	GDSL-motif lipase, putative	S.X.	H.G.	Please select
0.53	74.9	Ta.22990.1.S1_at	BG909133	zeta-carotene desaturase	-	4e-25	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	S.X.	H.G.	Please select
0.43	62.2	Ta.6749.1.S1_at	BJ310539	-	-	8e-3	At3g44620	protein tyrosine phosphatase	S.X.	H.G.	Please select
0.42	60.9	Ta.10947.1.S1_at	CK152049	-	-	3e+0	At4g08280	-	S.X.	H.G.	Please select
0.35	49.8	Ta.3365.1.S1_at	CD920769	-	-	6e-1	At4g22220	ISU1	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.8	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250901	Tc_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250905	TcLr34_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250883	Tc_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250913	Tc_7dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	785	Ta.28403.1.S1_x_at	CK192904	-	-	4e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	C.G.	S.X.	Please select
0.78	0	730	Ta.9091.1.S1_at	CD926296	-	-	1e-1	At5g45950	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.13	2e-18	93	Ta.1188.1.S1_at	BE419313	-	-	1e+1	At5g60200	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	36	TaAffx.110323.1.S1_at	CA660405	-	-	1e+0	At5g01860	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.43793.1.S1_at	BE492866	-	-	3e+0	At4g32100	galactosyltransferase	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.26644.1.S1_at	CA686794	-	-	4e+0	Atmg01240	-	C.G.	S.X.	Please select
0.01	2e+0	34	Ta.2760.1.S1_at	AY040245.1	Na+/H+ antiporter	-	2e-11	At5g27150	NHX1 (NA+/H+ EXCHANGER)	C.G.	S.X.	Please select
0.02	6e+0	32	TaAffx.79526.1.S1_at	CA713454	-	-	4e+0	Atmg00160	-	C.G.	S.X.	Please select
0.02	6e+0	32	TaAffx.65940.1.A1_at	BJ215869	-	-	2e+0	At4g31060	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At3g22260	821796	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:plasma membrane;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	GmaAffx.89314.1.S1_at	CK606601	-	-	2e-35	At3g16080	60S ribosomal protein L37 (RPL37C)	C.G.	S.X.	Please select
0.47	1e-178	624	Hordeum vulgare	Contig9787_at	Contig9787	-	-	4e+0	At2g27505	-	C.G.	S.X.	Please select
0.27	1e-70	268	Oryza sativa	Os12g0174800	AK064263.1	-	Tyrosine specific protein phosphatase familyprotein	1e-2	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.21888.1.A1_a_at	CK096334	hypothetical protein	-	2e-24	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-5	48	Vitis vinifera	1614819_at	CF513559	hypothetical protein LOC100259847	-	2e-11	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please select
0.24	5e-51	200	Zea mays	Zm.17542.1.A1_at	CK369401	receptor-type tyrosine-protein phosphatase S	-	3e+0	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage