CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.28600.2.S1_a_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.28600.2.S1_a_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) S.X. H.G.
0.83 93.4 Ta.28600.3.S1_x_at CA641063 - - 4e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) S.X. H.G.
0.80 92.2 Ta.28600.2.S1_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) S.X. H.G.
0.60 81.0 Ta.28600.1.S1_at BE443069 - - 2e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) S.X. H.G.
0.43 62.2 Ta.20696.1.S1_at BQ804501 - - 1e+1 At5g04180 ACA3 (ALPHA CARBONIC ANHYDRASE 3) S.X. H.G.
0.40 58.4 Ta.28600.1.S1_a_at BE443069 - - 2e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 97.8 GSM138204 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.2 97.5 GSM138211 genotype B65 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.4 96.8 GSM111245 genotype G13 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.2 96.6 GSM138147 genotype G13 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.2 96.6 GSM111236 genotype F38b developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1 96.4 GSM138200 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9 96.1 GSM138168 genotype B68 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6 95.6 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM314281 tissue type: 3-5 DAP caryopsis - rep1 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM111192 genotype F38a developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.90 0 1069 Ta.28600.2.S1_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) C.G. S.X.
0.26 7e-176 617 Ta.28600.3.S1_x_at CA641063 - - 4e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) C.G. S.X.
0.41 1e-115 416 Ta.28600.1.S1_a_at BE443069 - - 2e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) C.G. S.X.
0.41 1e-115 416 Ta.28600.1.S1_at BE443069 - - 2e-9 At3g45010 scpl48 (serine carboxypeptidase-like 48) C.G. S.X.
0.12 5e-115 414 TaAffx.144000.1.S1_x_at AY049041.1 - - 2e+0 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.12 5e-115 414 TaAffx.144000.1.S1_s_at AY049041.1 - - 2e+0 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.25 5e-115 414 Ta.28765.2.S1_at CA697361 - - 8e+0 At5g38420 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) C.G. S.X.
0.25 5e-115 414 Ta.28765.2.S1_a_at CA697361 - - 8e+0 At5g38420 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) C.G. S.X.
0.28 5e-115 414 Ta.28715.2.S1_a_at CA721777 - - 9e-21 At5g35160 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-7 57 Arabidopsis thaliana At3g45010 823636 scpl48 (serine carboxypeptidase-like 48) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB - - - C.G. S.X.
0.26 3e-21 103 Glycine max GmaAffx.17324.1.S1_at BE800373 - - 4e+0 At3g58100 PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5) C.G. S.X.
0.30 3e-127 454 Hordeum vulgare Contig600_at Contig600 - - 1e-12 At3g10410 scpl49 (serine carboxypeptidase-like 49) C.G. S.X.
0.16 1e-83 311 Oryza sativa OsAffx.27508.85.S1_s_at - - - 0 C.G. S.X.
0.20 1e-72 274 Populus trichocarpa PtpAffx.249.561.A1_at CV244743 - - 2e+0 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
0.27 2e-86 317 Vitis vinifera 1613699_s_at CB977638 - - 5e+0 At4g30670 unknown protein C.G. S.X.
0.23 4e-27 121 Zea mays Zm.2038.1.S1_at CO519681 hypothetical protein LOC100279929 - 4e-4 At3g45010 scpl48 (serine carboxypeptidase-like 48) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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