Gene omics information

Query gene ID	Ta.28600.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.5	Ta.28600.1.S1_a_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	S.X.	H.G.	Please select
0.67	86.3	TaAffx.37775.1.A1_s_at	BJ266103	-	-	1e+0	At4g19200	proline-rich family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.16251.2.S1_x_at	CA603407	-	-	7e+0	At5g56070	unknown protein	S.X.	H.G.	Please select
0.55	76.8	Ta.16251.3.S1_x_at	CA733104	-	-	8e-1	At5g48335	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.14101.1.S1_x_at	BQ804732	-	-	2e-10	At2g26580	YAB5 (YABBY5)	S.X.	H.G.	Please select
0.50	72.4	Ta.14101.1.S1_at	BQ804732	-	-	2e-10	At2g26580	YAB5 (YABBY5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.8	GSM111245	genotype G13 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.3	96.7	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6	95.6	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM111218	genotype F29 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM111206	genotype A88 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM314283	tissue type: 3-5 DAP caryopsis - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	1495	Ta.28600.1.S1_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please select
0.39	0	825	Ta.28600.3.S1_x_at	CA641063	-	-	4e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please select
0.41	1e-115	416	Ta.28600.2.S1_a_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please select
0.41	1e-115	416	Ta.28600.2.S1_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please select
0.08	5e-7	56	Ta.25362.1.A1_at	CD491122	-	-	3e-1	At5g22980	scpl47 (serine carboxypeptidase-like 47)	C.G.	S.X.	Please select
0.08	3e-5	50	Ta.13505.1.S1_at	CA651561	-	-	3e-6	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please select
0.06	5e-4	46	Ta.28305.1.S1_a_at	CD453546	-	-	4e-5	At5g22980	scpl47 (serine carboxypeptidase-like 47)	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.12966.1.A1_at	CA486384	-	-	1e+0	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.614.1.S1_at	BQ168765	-	-	2e+0	At3g02500	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-9	63	Arabidopsis thaliana	At3g45010	823636	scpl48 (serine carboxypeptidase-like 48)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	7e-16	85	Glycine max	GmaAffx.74451.1.A1_at	BU548027	-	-	5e-9	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please select
0.48	0	1146	Hordeum vulgare	Contig600_at	Contig600	-	-	1e-12	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please select
0.34	1e-144	513	Oryza sativa	Os02g0114200	AK073508.1	-	Serine carboxypeptidase III precursor (EC3.4.16.5)	3e-10	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-19	97	Populus trichocarpa	PtpAffx.8880.1.S1_at	CV278627	hypothetical protein	-	3e-31	At3g10410	scpl49 (serine carboxypeptidase-like 49)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	3e-8	57	Vitis vinifera	1618311_at	CF204566.1	-	-	3e-11	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please select
0.48	2e-75	282	Zea mays	Zm.2038.1.S1_at	CO519681	hypothetical protein LOC100279929	-	4e-4	At3g45010	scpl48 (serine carboxypeptidase-like 48)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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