CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.28587.3.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.28587.3.S1_x_at CN010440 - - 9e-4 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.80 92.2 Ta.28587.2.S1_a_at BG313972 - - 2e-4 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.55 76.8 Ta.28587.1.S1_x_at CA645579 - - 4e-2 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.50 72.4 Ta.28587.2.S1_x_at BG313972 - - 2e-4 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related S.X. H.G.
0.31 42.7 Ta.9141.1.S1_at CK196417 - - 7e-1 At1g62333 unknown protein S.X. H.G.
0.06 7.6 Ta.18842.1.S1_at CA642820 - - 7e-1 At5g61280 remorin family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.8 99.3 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
9.8 99.1 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
8.7 98.9 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
6.9 98.4 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
6.1 98.1 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM111236 genotype F38b developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1 94.5 GSM111228 genotype B65 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0 94.3 GSM138177 genotype A40 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0 94.3 GSM324495 Si+ B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.63 6e-153 539 Ta.28587.2.S1_a_at BG313972 - - 2e-4 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.63 6e-153 539 Ta.28587.2.S1_x_at BG313972 - - 2e-4 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.33 8e-106 383 Ta.28587.1.S1_x_at CA645579 - - 4e-2 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.16 9e-38 157 TaAffx.128418.116.S1_at CA695822 - - 1e+0 At2g07774 unknown protein C.G. S.X.
0.16 9e-38 157 TaAffx.128418.118.S1_at CA677378 - - 1e+0 At1g48380 RHL1 (ROOT HAIRLESS 1) C.G. S.X.
0.15 5e-36 151 TaAffx.128418.121.S1_at CA697436 - - 1e+0 At4g09170 unknown protein C.G. S.X.
0.09 1e-33 143 TaAffx.128418.12.S1_at BE213544 - - 3e+0 At2g31680 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) C.G. S.X.
0.14 5e-33 141 TaAffx.128418.35.A1_at CB412179 - - 5e+0 At4g08980 F-box family protein (FBW2) C.G. S.X.
0.09 5e-24 111 TaAffx.128418.69.S1_at BE217028 - - 7e+0 At5g56840 DNA-binding family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-4 44 Arabidopsis thaliana At4g01600 828085 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:unknown;C:unknown;P - - - C.G. S.X.
0.16 2e-20 99 Glycine max GmaAffx.89425.1.A1_s_at CK606255 - - 4e-1 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.36 1e-93 341 Hordeum vulgare Contig20012_at Contig20012 - - 2e-3 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.11 9e-27 121 Oryza sativa Os03g0736700 AK073026.1 - GRAM domain containing protein 6e-1 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related C.G. S.X.
0.07 7e-33 141 Populus trichocarpa PtpAffx.250004.1.S1_at 13936324-1 - - 1e+0 At2g32785 - C.G. S.X.
0.16 7e-14 75 Vitis vinifera 1619821_at CB343526 - - 7e+0 At4g12005 unknown protein C.G. S.X.
0.19 4e-38 157 Zea mays ZmAffx.1135.2.A1_at AW455736 - - 2e-1 At1g04930 hydroxyproline-rich glycoprotein family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage