Gene omics information

Query gene ID	Ta.2840.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Ta.2840.1.S1_at	BJ311413	-	-	4e+0	At1g58007	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.5845.2.A1_at	CK208140	-	-	5e+0	Atmg01220	-	S.X.	H.G.	Please select
0.50	72.4	Ta.7648.1.A1_at	BJ319648	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select
0.50	72.4	Ta.28733.1.S1_at	CN012778	high mobility group protein-like	-	6e-4	At5g59370	ACT4 (ACTIN 4)	S.X.	H.G.	Please select
0.40	58.4	Ta.9218.1.A1_at	BQ170512	-	-	1e-1	At1g09320	agenet domain-containing protein	S.X.	H.G.	Please select
0.33	46.9	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.3	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
10.8	99.2	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-8	59	Ta.11782.1.S1_at	BQ170789	-	-	8e+0	At5g50960	NBP35 (NUCLEOTIDE BINDING PROTEIN 35)	C.G.	S.X.	Please select
0.02	4e-6	54	Ta.5993.1.S1_at	CK192868	-	-	6e-1	At2g42750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	3e-4	48	Ta.9151.1.S1_x_at	CK215909	-	-	1e+1	At1g71780	unknown protein	C.G.	S.X.	Please select
0.02	3e-4	48	Ta.5530.1.S1_at	CK198647	-	-	4e+0	At1g70944	unknown protein	C.G.	S.X.	Please select
0.02	3e-4	48	Ta.30375.1.A1_at	CK199586	-	-	4e-7	At2g43200	dehydration-responsive family protein	C.G.	S.X.	Please select
0.02	2e-2	42	Ta.22986.1.S1_x_at	BJ307901	-	-	2e-22	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.01	6e-2	40	Ta.6808.1.S1_at	CK164056	-	-	1e-6	At5g41060	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.01	6e-2	40	Ta.4419.1.S1_at	CK193073	-	-	3e-6	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.02	6e-2	40	Ta.14559.1.S1_x_at	CD928218	-	-	5e-4	At3g03100	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At1g58007	5007813	unknown protein	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-2	40	Glycine max	GmaAffx.63408.1.S1_at	AW099756	-	-	5e-31	At1g29980	-	C.G.	S.X.	Please select
0.75	0	1667	Hordeum vulgare	Contig5845_at	Contig5845	-	-	3e-3	At2g34510	-	C.G.	S.X.	Please select
0.56	7e-139	496	Oryza sativa	Os01g0756600	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e+0	36	Populus trichocarpa	Ptp.1230.1.S1_at	CF227747	-	-	4e-10	At2g41420	proline-rich family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-8	57	Vitis vinifera	1609590_s_at	CB981725	hypothetical protein LOC100253669	-	3e-25	At2g34510	-	C.G.	S.X.	Please select
0.45	7e-120	430	Zea mays	Zm.2385.2.A1_a_at	AY111554.1	DNA-binding protein	-	1e-15	At2g34510	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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