Gene omics information

Query gene ID	Ta.28355.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.28355.1.S1_x_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select
0.83	93.4	Ta.28355.3.S1_x_at	BJ242210	-	-	7e-27	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select
0.83	93.4	Ta.28355.1.S1_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select
0.80	92.2	Ta.28355.2.S1_x_at	CA498269	-	-	6e-51	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select
0.67	86.3	Ta.28355.2.S1_a_at	CA498269	-	-	6e-51	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select
0.29	39.2	Ta.2853.1.S1_at	BJ306897	-	-	2e-6	At2g32520	dienelactone hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	94.0	GSM138173	genotype DH95 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138208	genotype H23 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM138159	genotype F36 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM138201	genotype F48 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM138182	genotype A10 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM138148	genotype F29 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM111238	genotype A91 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	0	876	Ta.28355.1.S1_a_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.91	0	876	Ta.28355.1.S1_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.57	0	662	Ta.28355.3.S1_x_at	BJ242210	-	-	7e-27	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.33	4e-131	468	Ta.28355.2.S1_a_at	CA498269	-	-	6e-51	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.33	4e-131	468	Ta.28355.2.S1_x_at	CA498269	-	-	6e-51	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.17	9e-58	224	Ta.28765.1.A1_at	CD452404	-	-	9e+0	At5g38960	germin-like protein, putative	C.G.	S.X.	Please select
0.16	5e-50	198	Ta.12782.1.S1_at	BQ169620	-	-	5e+0	At4g18090	unknown protein	C.G.	S.X.	Please select
0.12	2e-30	133	TaAffx.32021.1.S1_at	CA602761	-	-	1e+1	At4g28820	zinc finger (HIT type) family protein	C.G.	S.X.	Please select
0.12	4e-26	119	TaAffx.89871.2.S1_at	BJ317866	-	-	4e+0	At3g58010	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-19	95	Arabidopsis thaliana	At5g43940	834417	HOT5 (sensitive to hot temperatures 5)	Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-14	81	Glycine max	Gma.11027.1.S1_at	BG511525	-	-	3e-114	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.38	0	658	Hordeum vulgare	Contig4341_s_at	Contig4341	-	-	3e-55	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.20	8e-72	272	Oryza sativa	Os02g0815500	AK099733.1	-	Alcohol dehydrogenase class III (EC 1.1.1.1)(Glutathione-dependent formaldehyde dehydrogenase) (EC1.2.1.1) (FDH) (FALDH) (GSH-FDH)	1e-76	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	2e-10	67	Populus trichocarpa	Ptp.4121.2.S1_at	CB240385	glutathione-dependent formaldehyde dehydrogenase	-	4e-22	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	6e-19	93	Vitis vinifera	1619373_at	CB920390	hypothetical protein LOC100258412	-	5e-50	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.19	9e-56	216	Zea mays	Zm.2742.1.A1_at	AY111235.1	formaldehyde dehydrogenase homolog1	-	6e-57	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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