CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.28291.1.S1_at

Gene name Ribosomal protein L6

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 Ta.28291.1.S1_at BJ318276 Ribosomal protein L6 - 2e-1 At1g74050 60S ribosomal protein L6 (RPL6C) S.X. H.G.
0.80 92.2 Ta.14369.1.S1_at BJ295658 - - 7e-99 At1g08360 60S ribosomal protein L10A (RPL10aA) S.X. H.G.
0.67 86.3 Ta.3326.2.S1_s_at CK170594 acidic ribosomal protein P2 - 1e-4 At3g44590 60S acidic ribosomal protein P2 (RPP2D) S.X. H.G.
0.64 83.6 Ta.23050.2.A1_x_at BJ295866 - - 2e-15 At5g15200 40S ribosomal protein S9 (RPS9B) S.X. H.G.
0.61 82.0 Ta.23050.1.S1_x_at BJ306856 - - 8e-22 At5g15200 40S ribosomal protein S9 (RPS9B) S.X. H.G.
0.56 78.6 Ta.9535.4.S1_x_at BJ242304 - - 1e-10 At2g19730 60S ribosomal protein L28 (RPL28A) S.X. H.G.
0.53 74.9 Ta.805.1.S1_at BJ220913 - - 9e-15 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) S.X. H.G.
0.50 72.4 Ta.24130.1.S1_x_at BU101253 60S ribosomal protein L15 - 5e-23 At4g17390 60S ribosomal protein L15 (RPL15B) S.X. H.G.
0.33 46.9 Ta.966.1.S1_s_at BQ483970 - - 7e-22 At2g32060 40S ribosomal protein S12 (RPS12C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.4 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
3.7 95.8 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM314263 tissue type: seedling, crown - rep1 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
3.0 94.3 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 6e-143 508 Ta.28704.1.S1_at BQ805465 - - 6e-2 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.27 1e-107 391 TaAffx.129527.1.S1_at CA708269 - - 2e+1 At5g02220 unknown protein C.G. S.X.
0.16 9e-28 125 TaAffx.58047.1.S1_at CA622831 - - 2e-4 At1g18540 60S ribosomal protein L6 (RPL6A) C.G. S.X.
0.23 4e-27 123 TaAffx.115031.1.S1_at CA621563 - - 3e-4 At1g18540 60S ribosomal protein L6 (RPL6A) C.G. S.X.
0.11 3e-24 113 Ta.14445.1.A1_x_at BJ243115 - - 2e+1 At5g63065 - C.G. S.X.
0.02 1e-2 42 Ta.7558.3.S1_a_at BQ609768 - - 3e-1 At4g12060 Clp amino terminal domain-containing protein C.G. S.X.
0.03 6e-1 36 Ta.17421.1.S1_at CA620695 - - 3e+0 At1g21327 unknown protein C.G. S.X.
0.02 6e-1 36 Ta.16659.1.S1_at CA601941 - - 8e+0 At5g40980 unknown protein C.G. S.X.
0.03 3e+0 34 Ta.7378.3.S1_at BJ319734 Protein H2B-6 - 7e-18 At5g22880 HTB2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Arabidopsis thaliana At1g74050 843744 60S ribosomal protein L6 (RPL6C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPA - - - C.G. S.X.
0.07 9e-7 56 Glycine max Gma.10826.4.S1_at AI442855 - - 5e-35 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.67 0 1098 Hordeum vulgare Contig1243_at Contig1243 - - 1e-1 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.56 1e-163 577 Oryza sativa Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
0.08 9e-4 46 Populus trichocarpa PtpAffx.549.1.A1_s_at CV247729 hypothetical protein - 1e-31 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.08 2e-10 65 Vitis vinifera 1621076_at CF207338 hypothetical protein LOC100257150 - 6e-16 At1g74050 60S ribosomal protein L6 (RPL6C) C.G. S.X.
0.44 4e-37 155 Zea mays Zm.16290.1.S1_at AI677084 - - 2e-7 At1g74060 60S ribosomal protein L6 (RPL6B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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