CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.28254.1.S1_s_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 94.1 Ta.28254.1.S1_s_at BJ274136 - - 3e-115 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) S.X. H.G.
0.44 64.5 Ta.25030.1.A1_x_at CA651136 - - 1e+1 At4g34760 auxin-responsive family protein S.X. H.G.
0.12 13.3 TaAffx.105673.1.S1_at CA731253 - - 1e+0 At1g08880 H2AXA S.X. H.G.
0.09 10.4 Ta.1716.2.S1_a_at CD895542 - - 1e+1 At5g57000 unknown protein S.X. H.G.
0.02 3.6 Ta.1060.2.S1_a_at CA642102 - - 1e+0 At3g13882 structural constituent of ribosome S.X. H.G.
0.01 2.4 Ta.10823.1.A1_s_at CK151765 - - 9e-1 At1g53280 DJ-1 family protein S.X. H.G.
0.01 2.4 Ta.10463.1.A1_at CD876249 protein kinase - 5e+0 At4g20290 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.8 99.7 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
15.3 99.6 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
14.3 99.5 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
11.6 99.3 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
9.5 99.1 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
9.3 99.0 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.8 97.2 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7 95.8 GSM138204 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5 95.4 GSM139912 Anther pre-meiosis rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 9e-91 335 Ta.220.1.S1_at AF120148.1 myo-inositol 1-phosphate synthase - 0 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.16 1e-52 208 Ta.21204.1.S1_at CA625180 - - 5e-21 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) C.G. S.X.
0.01 2e-5 52 Ta.19407.1.S1_at CA644762 - - 1e-9 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e-5 52 Ta.15927.1.S1_at CA501506 - - 2e-1 At3g46470 nucleic acid binding / nucleotide binding C.G. S.X.
0.02 2e-5 52 Ta.15846.1.S1_at CA498468 - - 2e+1 At5g62575 unknown protein C.G. S.X.
0.02 2e-5 52 Ta.14590.3.S1_at CK196800 - - 2e+0 At5g10230 ANNAT7 (ANNEXIN ARABIDOPSIS 7) C.G. S.X.
0.02 2e-5 52 Ta.13167.1.S1_at BQ166968 - - 7e+0 At5g02730 allergen V5/Tpx-1-related family protein C.G. S.X.
0.02 3e-4 48 Ta.15818.1.S1_at BJ213073 - - 1e+1 At4g23970 unknown protein C.G. S.X.
0.01 5e-3 44 TaAffx.48431.1.A1_at CD886403 - - 2e-4 At1g13980 GN (GNOM) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 3e-115 416 Arabidopsis thaliana At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) ** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. - - - C.G. S.X.
0.49 1e-87 325 Glycine max Gma.15564.2.S1_x_at CD395825 - - 2e-113 At5g10170 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) C.G. S.X.
0.81 0 2528 Hordeum vulgare Contig3592_at Contig3592 - - 4e-83 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) C.G. S.X.
0.67 0 1883 Oryza sativa Os03g0192700 AB012107.1 - Myo-inositol-1-phosphate synthase 9e-100 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) C.G. S.X.
0.49 2e-73 278 Populus trichocarpa Ptp.858.1.S1_at CV256345 hypothetical protein - 4e-138 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.52 0 672 Vitis vinifera 1613429_s_at CB974870 hypothetical protein LOC100259515 - 0 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.59 0 961 Zea mays Zm.2986.1.A1_at AF056326.1 low phytic acid1 - 4e-105 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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