Gene omics information

Query gene ID	Ta.28185.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	S.X.	H.G.	Please select
0.67	86.3	TaAffx.20065.1.S1_at	CK207580	-	-	2e-1	At3g45970	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	S.X.	H.G.	Please select
0.60	81.0	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.55	76.8	Ta.28185.1.S1_x_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.44	64.5	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	S.X.	H.G.	Please select
0.40	58.4	Ta.20706.1.S1_s_at	BQ838776	-	-	1e-11	At3g24740	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
50.1	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
49.2	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
41.7	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
7.6	98.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	1358	Ta.28185.1.S1_x_at	AL820475	-	-	2e-4	At3g46900	COPT2	C.G.	S.X.	Please select
0.80	0	1358	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	C.G.	S.X.	Please select
0.60	0	779	Ta.28185.3.S1_x_at	CD902302	-	-	3e-1	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	C.G.	S.X.	Please select
0.60	0	779	Ta.28185.3.S1_at	CD902302	-	-	3e-1	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	C.G.	S.X.	Please select
0.02	2e-1	38	TaAffx.26250.1.S1_at	CA690670	-	-	4e+0	At5g05220	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	38	Ta.6385.1.S1_at	CA719784	-	-	7e-16	At4g33200	XI-I	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.11232.1.S1_at	BE415954	-	-	1e-1	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	7e-1	36	Ta.10642.2.S1_x_at	CD454176	-	-	1e+0	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	C.G.	S.X.	Please select
0.02	7e-1	36	Ta.10642.2.S1_s_at	CD454176	-	-	1e+0	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	36	Arabidopsis thaliana	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-4	48	Glycine max	PsAffx.CL2191Contig1_at	PsAffx.CL2191Contig1	-	-	3e-1	Atmg00730	-	C.G.	S.X.	Please select
0.78	0	1152	Hordeum vulgare	Contig4046_s_at	Contig4046	-	-	6e-4	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.27	5e-40	167	Oryza sativa	Os01g0120700	AK067227.1	-	Conserved hypothetical protein	1e+0	At3g63400	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e-1	36	Populus trichocarpa	PtpAffx.202688.1.S1_at	pmrna5363	hypothetical protein	-	2e-4	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	36	Vitis vinifera	1611009_at	CB972297	hypothetical protein LOC100264948	-	4e-1	At1g54990	AXR4 (AUXIN RESISTANT 4)	C.G.	S.X.	Please select
0.26	3e-13	75	Zea mays	Zm.1236.1.S1_at	BE553019	-	-	2e-6	At2g01100	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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