Gene omics information

Query gene ID	Ta.28185.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.73	89.1	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	S.X.	H.G.	Please select
0.67	86.3	Ta.28185.1.S1_x_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select
0.60	81.0	TaAffx.20065.1.S1_at	CK207580	-	-	2e-1	At3g45970	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	S.X.	H.G.	Please select
0.53	74.9	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	S.X.	H.G.	Please select
0.40	58.4	Ta.28185.3.S1_x_at	CD902302	-	-	3e-1	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	S.X.	H.G.	Please select
0.19	22.4	Ta.242.1.S1_at	AF244997.1	ADP-glucose pyrophosphorylase	-	2e-122	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.8	99.8	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
23.1	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
23.0	99.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
12.7	99.4	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2369	Ta.28185.1.S1_x_at	AL820475	-	-	2e-4	At3g46900	COPT2	C.G.	S.X.	Please select
0.77	0	1358	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	C.G.	S.X.	Please select
0.49	0	706	Ta.28185.3.S1_x_at	CD902302	-	-	3e-1	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	C.G.	S.X.	Please select
0.49	0	706	Ta.28185.3.S1_at	CD902302	-	-	3e-1	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	C.G.	S.X.	Please select
0.02	1e-2	42	Ta.3781.1.A1_a_at	BJ261396	-	-	2e+0	At2g16300	F-box family protein	C.G.	S.X.	Please select
0.02	5e-2	40	Ta.14923.1.S1_at	CK194919	-	-	6e-3	At1g30475	-	C.G.	S.X.	Please select
0.03	2e-1	38	TaAffx.85551.1.S1_at	CA621796	-	-	3e-1	At5g58412	-	C.G.	S.X.	Please select
0.01	2e-1	38	Ta.6385.1.S1_at	CA719784	-	-	7e-16	At4g33200	XI-I	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.20565.1.S1_at	CA643697	-	-	2e+0	At3g22620	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-4	48	Arabidopsis thaliana	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-5	52	Glycine max	GmaAffx.82656.2.S1_s_at	AI960985	-	-	2e-5	At2g01100	unknown protein	C.G.	S.X.	Please select
0.75	0	1084	Hordeum vulgare	Contig4052_at	Contig4052	-	-	6e-4	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.25	3e-29	131	Oryza sativa	Os01g0120700	AK067227.1	-	Conserved hypothetical protein	1e+0	At3g63400	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-2	42	Populus trichocarpa	PtpAffx.220767.1.S1_at	pmrna37192	hypothetical protein	-	3e-1	At1g47300	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	36	Vitis vinifera	1607753_at	CA816321	hypothetical protein LOC100263239	-	1e-6	At1g65230	unknown protein	C.G.	S.X.	Please select
0.17	9e-11	67	Zea mays	Zm.1236.1.S1_at	BE553019	-	-	2e-6	At2g01100	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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