Gene omics information

Query gene ID	Ta.28170.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.28170.1.S1_x_at	CA722194	-	-	3e-1	At4g36750	quinone reductase family protein	S.X.	H.G.	Please select
0.71	88.0	Ta.28170.2.S1_x_at	BJ281672	-	-	4e-1	At4g36750	quinone reductase family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.13276.1.S1_at	CD916692	-	-	8e-9	At4g34700	complex 1 family protein / LVR family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.28170.1.S1_s_at	CA722194	-	-	3e-1	At4g36750	quinone reductase family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.3169.1.S1_x_at	CD938596	-	-	2e+0	At3g18410	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please select
0.50	72.4	Ta.2598.1.S1_at	BJ238724	Mitochondrial ATP synthase precursor	-	8e-7	At2g21870	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.6	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	920	Ta.28170.1.S1_s_at	CA722194	-	-	3e-1	At4g36750	quinone reductase family protein	C.G.	S.X.	Please select
0.60	1e-176	619	Ta.28170.2.S1_x_at	BJ281672	-	-	4e-1	At4g36750	quinone reductase family protein	C.G.	S.X.	Please select
0.60	4e-130	464	Ta.25018.1.S1_at	CA646955	-	-	9e-1	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	C.G.	S.X.	Please select
0.09	3e-7	56	TaAffx.9319.1.S1_at	CA602986	-	-	9e-1	At3g44810	F-box family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Ta.3320.2.A1_at	BJ309912	-	-	2e+0	At5g63660	PDF2.5	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.3320.1.S1_at	BJ306579	-	-	3e-3	At5g14680	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.1259.2.S1_at	CA699626	-	-	1e+0	At2g18020	EMB2296 (embryo defective 2296)	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.1259.1.S1_at	CK171724	-	-	2e-13	At1g19970	ER lumen protein retaining receptor family protein	C.G.	S.X.	Please select
0.06	3e-1	36	TaAffx.14950.2.S1_at	CA660870	-	-	6e-2	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g36750	829828	quinone reductase family protein	F:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	7e-12	71	Glycine max	Gma.12386.1.S1_at	CD401243	-	-	3e-1	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.68	2e-120	430	Hordeum vulgare	Contig7345_at	Contig7345	-	-	3e-1	At4g36750	quinone reductase family protein	C.G.	S.X.	Please select
0.33	7e-19	95	Oryza sativa	OsAffx.27340.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e+0	32	Populus trichocarpa	PtpAffx.82437.2.A1_at	CV245956	hypothetical protein	-	3e-8	At5g60340	maoC-like dehydratase domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1607346_at	CF415088	-	-	3e+0	At3g46904	unknown protein	C.G.	S.X.	Please select
0.25	3e-24	111	Zea mays	Zm.7997.1.A1_a_at	AY106130.1	fiber protein Fb11	-	5e+0	At3g29370	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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