Gene omics information

Query gene ID	Ta.28022.2.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.28022.2.A1_at	BJ309684	-	-	1e-47	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.80	92.2	Ta.214.2.A1_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.73	89.1	Ta.214.2.A1_x_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.67	86.3	Ta.2864.1.S1_at	CK208206	-	-	5e-7	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	S.X.	H.G.	Please select
0.43	62.2	Ta.214.1.S1_x_at	CK210896	beta-tubulin 5	-	2e-168	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please select
0.30	40.9	Ta.2270.1.S1_at	BQ168154	-	-	1e+0	At1g14380	IQD28 (IQ67 DOMAIN PROTEIN 28)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM138175	genotype A81 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM138174	genotype A81 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138217	genotype H9 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	809	Ta.214.2.A1_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.56	0	809	Ta.214.2.A1_x_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.42	0	652	Ta.214.1.S1_x_at	CK210896	beta-tubulin 5	-	2e-168	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.42	0	652	Ta.214.1.S1_at	CK210896	beta-tubulin 5	-	2e-168	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select
0.21	7e-120	430	Ta.28022.1.S1_x_at	U76895.1	-	-	2e-73	At5g44340	TUB4	C.G.	S.X.	Please select
0.22	2e-108	393	Ta.212.1.S1_at	U76744.1	Beta-tubulin 1	-	6e-147	At5g62700	TUB3	C.G.	S.X.	Please select
0.23	2e-101	369	Ta.28022.3.S1_x_at	BJ217501	-	-	1e-178	At5g62700	TUB3	C.G.	S.X.	Please select
0.23	2e-101	369	Ta.28022.3.S1_at	BJ217501	-	-	5e-178	At5g62690	TUB2	C.G.	S.X.	Please select
0.19	1e-84	313	Ta.1544.1.S1_at	BJ264595	beta-tubulin 2	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-47	190	Arabidopsis thaliana	At5g12250	831100	TUB6 (BETA-6 TUBULIN)	Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.35	1e-35	151	Glycine max	HgAffx.19743.1.S1_at	CB299787	-	-	8e-35	At5g62690	TUB2	C.G.	S.X.	Please select
0.40	3e-120	430	Hordeum vulgare	Contig1516_s_at	Contig1516	-	-	3e-72	At5g62700	TUB3	C.G.	S.X.	Please select
0.23	2e-93	343	Oryza sativa	Os01g0805900	D30716.1	-	Tubulin beta-2 chain (Beta-2 tubulin)	0	At5g12250	TUB6 (BETA-6 TUBULIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	2e-40	167	Populus trichocarpa	PtpAffx.260.1.A1_s_at	BP935880	tubulin, beta chain	-	2e-57	At5g44340	TUB4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	3e-33	141	Vitis vinifera	1609398_at	CF413640	hypothetical protein LOC100261736	-	3e-66	At5g23860	TUB8	C.G.	S.X.	Please select
0.38	2e-102	371	Zea mays	Zm.7750.3.A1_at	CB604740	-	-	1e-22	At1g20010	TUB5	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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