Gene omics information

Query gene ID	Ta.280.2.A1_at
Gene name	Seven transmembrane-spanning protein
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.280.2.A1_at	AY584534.1	Seven transmembrane-spanning protein	-	2e-4	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	S.X.	H.G.	Please select
0.14	15.8	Ta.24981.1.S1_at	CA740068	40S ribosomal protein S9	-	2e-6	At5g39850	40S ribosomal protein S9 (RPS9C)	S.X.	H.G.	Please select
0.13	14.6	Ta.30647.1.A1_at	AJ577385.1	hypothetical LOC543023	-	2e+0	At2g40330	Bet v I allergen family protein	S.X.	H.G.	Please select
0.12	13.3	TaAffx.58364.1.S1_at	CA620231	-	-	2e+1	At4g10610	CID12	S.X.	H.G.	Please select
0.10	11.3	TaAffx.31159.1.S1_at	CA618930	-	-	3e-1	At3g52400	SYP122 (SYNTAXIN OF PLANTS 122)	S.X.	H.G.	Please select
0.09	10.4	Ta.22701.3.A1_at	CA680430	-	-	4e+0	At5g61410	RPE	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
156.2	100.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
12.1	99.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM138192	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.3	97.6	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314282	tissue type: 3-5 DAP caryopsis - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	2750	Ta.280.2.S1_x_at	BG904890	MLo1 protein /// seven transmembrane-spanning protein	-	2e-4	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	C.G.	S.X.	Please select
0.71	0	2177	Ta.280.1.S1_s_at	AF384144.1	MLo1 protein /// MLo protein /// seven transmembrane-spanning protein	-	6e-2	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	C.G.	S.X.	Please select
0.50	0	797	Ta.24086.1.S1_s_at	AF267999.1	MLo1 protein /// Mlo-like protein /// MLo protein /// seven transmembrane-spanning protein	-	2e-1	At2g33670	MLO5 (MILDEW RESISTANCE LOCUS O 5)	C.G.	S.X.	Please select
0.50	0	797	Ta.24086.1.A1_s_at	AF267999.1	Mlo-like protein	-	2e-1	At2g33670	MLO5 (MILDEW RESISTANCE LOCUS O 5)	C.G.	S.X.	Please select
0.14	2e-13	77	TaAffx.28537.1.S1_at	CA658934	-	-	4e+0	At2g35200	unknown protein	C.G.	S.X.	Please select
0.03	8e-7	56	Ta.27345.1.S1_at	CA745732	-	-	9e-1	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	C.G.	S.X.	Please select
0.03	2e-1	38	Ta.28659.2.S1_at	CA666466	-	-	6e-2	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.28659.1.S1_x_at	CA670381	-	-	1e-1	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.02	2e-1	38	Ta.28659.3.S1_x_at	CA689419	-	-	9e-2	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-4	48	Arabidopsis thaliana	At1g42560	840861	MLO9 (MILDEW RESISTANCE LOCUS O 9)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	38	Glycine max	GmaAffx.46884.1.S1_at	BI317159	-	-	2e-14	At5g53760	MLO11 (MILDEW RESISTANCE LOCUS O 11)	C.G.	S.X.	Please select
0.50	0	1415	Hordeum vulgare	Contig6351_at	Contig6351	-	-	3e-4	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	C.G.	S.X.	Please select
0.37	3e-146	519	Oryza sativa	Os03g0129100	AF384030.1	-	Seven transmembrane protein MLO2	7e-2	At1g26700	MLO14 (MILDEW RESISTANCE LOCUS O 14)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-4	48	Populus trichocarpa	PtpAffx.207245.1.S1_at	pmrna14360	-	-	1e-3	At2g17430	MLO7 (MILDEW RESISTANCE LOCUS O 7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e+0	32	Vitis vinifera	1614603_at	CF512411	-	-	1e+0	At1g56553	-	C.G.	S.X.	Please select
0.42	3e-146	517	Zea mays	Zm.18022.1.S1_at	AY029312.2	barley mlo defense gene homolog1	-	3e-1	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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