Gene omics information

Query gene ID	Ta.27923.2.S1_x_at
Gene name	small subunit
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.27923.2.S1_x_at	CK212552	small subunit	-	3e-14	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	S.X.	H.G.	Please select
0.83	93.4	Ta.30808.1.S1_s_at	CK211832	-	-	4e-15	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	S.X.	H.G.	Please select
0.71	88.0	Ta.28363.2.S1_at	BE217056	-	-	1e-4	At5g64040	PSAN	S.X.	H.G.	Please select
0.71	88.0	Ta.27761.1.S1_x_at	CK213184	-	-	7e-6	At1g30380	PSAK (photosystem I subunit K)	S.X.	H.G.	Please select
0.71	88.0	Ta.85.1.S1_at	CK208348	23kDa oxygen evolving protein of photosystem II	-	2e-10	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	S.X.	H.G.	Please select
0.67	86.3	Ta.28697.3.S1_at	CK211399	-	-	8e-25	At3g61470	LHCA2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.1	GSM298054	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM246384	SB165_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.7	95.8	GSM246395	SB69_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.7	95.8	GSM250893	TcLr34_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM246394	SB69_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.6	95.6	GSM298055	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM246393	SB109_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.6	95.6	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	1011	Ta.2752.3.S1_x_at	BJ266715	ribulosebisphosphate carboxylase small subunit	-	8e-12	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.59	0	971	Ta.2752.2.S1_x_at	BE216923	-	-	6e-13	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.46	2e-169	595	Ta.2752.1.A1_x_at	CA680240	ribulosebisphosphate carboxylase small subunit	-	7e-9	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.46	2e-169	595	Ta.2752.1.S1_x_at	BE213237	ribulosebisphosphate carboxylase small subunit	-	7e-9	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.46	2e-169	595	Ta.2752.1.A1_at	CA680240	ribulosebisphosphate carboxylase small subunit	-	7e-9	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.16	7e-105	381	Ta.30808.1.S1_s_at	CK211832	-	-	4e-15	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	C.G.	S.X.	Please select
0.37	2e-83	309	TaAffx.28584.1.S1_x_at	CA658565	-	-	4e+0	At5g48485	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)	C.G.	S.X.	Please select
0.34	9e-52	204	TaAffx.113948.1.S1_at	CA600925	-	-	2e+1	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	C.G.	S.X.	Please select
0.10	3e-51	202	Ta.25199.1.S1_at	CA735628	-	-	6e-1	At1g49290	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-14	79	Arabidopsis thaliana	At1g67090	843029	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	F:ribulose-bisphosphate carboxylase activity, copper ion binding;P:response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 10 components;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	1e-11	71	Glycine max	Gma.289.1.S1_x_at	AF303941.1	ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 /// ribulose-1,5-bisphosphate carboxylase small subunit /// ribulose-1,5-bisphosphate carboxylase small subunit	-	7e-34	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.55	1e-153	541	Hordeum vulgare	Contig965_at	Contig965	-	-	6e-5	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.38	4e-83	309	Oryza sativa	Os12g0291400	CB682251	-	Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment)	4e-5	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-4	48	Populus trichocarpa	PtpAffx.249.460.S1_at	AJ773062	hypothetical protein	-	2e-11	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	3e-24	111	Vitis vinifera	1613936_x_at	CF568996	-	-	8e-24	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	C.G.	S.X.	Please select
0.26	4e-24	111	Zea mays	Zm.6763.4.S1_at	BG841872	hypothetical protein LOC100279574	-	8e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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