Gene omics information

Query gene ID	Ta.27776.1.S1_at
Gene name	MADS-box transcription factor TaAGL2
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.4	Ta.27776.1.S1_at	BJ274612	MADS-box transcription factor TaAGL2	-	3e-12	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.88	94.4	Ta.8220.1.S1_at	CD926799	-	-	3e-2	At5g66330	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.85	93.8	Ta.8220.1.S1_x_at	CD926799	-	-	3e-2	At5g66330	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.81	92.4	Ta.8359.1.S1_s_at	BQ172037	-	-	5e-1	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	S.X.	H.G.	Please select
0.79	91.3	Ta.8359.1.S1_at	BQ172037	-	-	5e-1	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	S.X.	H.G.	Please select
0.79	91.3	Ta.9998.1.S1_at	CD932107	VPE1 protein	-	1e-9	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	S.X.	H.G.	Please select
0.77	90.8	Ta.24548.1.S1_at	CD930155	-	-	9e+0	At3g51100	unknown protein	S.X.	H.G.	Please select
0.70	87.2	Ta.8220.2.S1_at	BM137368	-	-	3e-2	At5g66330	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.69	86.9	Ta.8220.2.S1_x_at	BM137368	-	-	3e-2	At5g66330	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.64	83.6	Ta.4900.1.S1_at	BJ232326	-	-	1e-3	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.8	GSM138186	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.3	96.7	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9	96.1	GSM138152	genotype G32 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM138158	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM111228	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM138159	genotype F36 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM111229	genotype B65 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM138198	genotype C22 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-57	224	Ta.12700.1.S1_at	AB084577.1	MADS box transcription factor	-	3e-6	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.11	6e-32	139	Ta.21250.1.S1_at	BJ273029	MADS-box transcription factor TaAGL18	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.11	2e-31	137	Ta.777.1.S1_at	AB007505.1	MADS box transcription factor	-	1e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.10	9e-28	125	Ta.3395.1.S1_at	CN009238	MADS-box transcription factor TaAGL8	-	5e-4	At3g57390	AGL18	C.G.	S.X.	Please select
0.11	9e-28	125	Ta.14469.2.A1_a_at	CD374109	MADS-box transcription factor TaAGL16	-	2e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.11	6e-26	119	Ta.25343.1.A1_at	CD374116	MADS-box transcription factor TaAGL7	-	1e-7	At2g45660	AGL20 (AGAMOUS-LIKE 20)	C.G.	S.X.	Please select
0.10	9e-25	115	TaAffx.19661.1.S1_at	BJ239393	MADS-box transcription factor	-	4e-5	At4g11880	AGL14 (agamous-like 14)	C.G.	S.X.	Please select
0.09	9e-25	115	Ta.13865.1.S1_at	AF543316.1	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.11	1e-23	111	Ta.14469.3.S1_a_at	BJ276784	MADS-box transcription factor TaAGL16	-	3e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-12	73	Arabidopsis thaliana	At4g18960	827631	AG (AGAMOUS)	Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-9	65	Glycine max	Gma.6760.1.S1_at	BU544178	-	-	1e-42	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.19	2e-54	212	Hordeum vulgare	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.38	4e-136	486	Oryza sativa	Os12g0207000	AY551912.1	-	Transcription factor	9e-21	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-17	91	Populus trichocarpa	PtpAffx.162863.1.S1_at	BU882965	hypothetical protein	-	1e-6	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	9e-13	73	Vitis vinifera	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.40	4e-142	504	Zea mays	Zm.270.1.S1_at	U31522.1	hypothetical protein LOC100216659	-	8e-19	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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