Gene omics information

Query gene ID	Ta.27569.1.A1_at
Gene name	MADS-box transcription factor TaAGL35
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.27569.1.A1_at	CD890142	MADS-box transcription factor TaAGL35	-	8e-2	At5g51870	AGL71 (AGAMOUS-LIKE 71)	S.X.	H.G.	Please select
0.63	83.1	Ta.23282.2.A1_at	CA593333	-	-	4e-1	At5g12940	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.56	78.6	Ta.6567.2.S1_at	CA744830	-	-	4e+0	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	S.X.	H.G.	Please select
0.56	78.6	Ta.7168.3.S1_at	CA745143	-	-	6e-34	At4g30600	signal recognition particle receptor alpha subunit family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.10014.2.S1_at	CA685632	-	-	7e+0	At1g77290	tetrachloro-p-hydroquinone reductive dehalogenase-related	S.X.	H.G.	Please select
0.48	69.0	TaAffx.5994.1.S1_at	CA693717	-	-	1e+1	At5g41400	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.48	69.0	Ta.9465.2.A1_at	CA637378	-	-	1e-3	At2g40110	yippee family protein	S.X.	H.G.	Please select
0.46	66.8	Ta.21296.2.S1_at	CD918312	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select
0.46	66.8	TaAffx.17257.3.A1_at	CA743247	-	-	4e+0	At4g08730	unknown protein	S.X.	H.G.	Please select
0.35	49.8	Ta.10537.1.A1_at	CA741493	-	-	4e-3	At5g60990	DEAD/DEAH box helicase, putative (RH10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
62.1	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
30.6	99.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
23.2	99.8	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.6	99.3	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM111186	genotype B68 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
9.2	99.0	GSM138175	genotype A81 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.0	99.0	GSM246385	SB165_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
7.3	98.6	GSM143494	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.1	98.5	GSM138216	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.6	98.3	GSM138161	genotype A91 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1076	Ta.27569.1.S1_at	CD888059	MADS-box transcription factor TaAGL35	-	8e-2	At5g51870	AGL71 (AGAMOUS-LIKE 71)	C.G.	S.X.	Please select
0.15	3e-35	149	Ta.14090.1.S1_at	AB107991.1	PISTILLATA-like MADS box protein	-	4e-2	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please select
0.15	3e-26	119	Ta.4889.1.S1_at	AB107992.1	PISTILLATA-like MADS box protein	-	6e-4	At5g20240	PI (PISTILLATA)	C.G.	S.X.	Please select
0.10	4e-25	115	Ta.21250.1.S1_at	BJ273029	MADS-box transcription factor TaAGL18	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.09	4e-25	115	Ta.143.1.S1_at	AB107993.1	APETALA3-like MADS box protein	-	9e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.10	2e-21	103	TaAffx.19661.1.S1_at	BJ239393	MADS-box transcription factor	-	4e-5	At4g11880	AGL14 (agamous-like 14)	C.G.	S.X.	Please select
0.11	2e-21	103	Ta.25343.1.A1_at	CD374116	MADS-box transcription factor TaAGL7	-	1e-7	At2g45660	AGL20 (AGAMOUS-LIKE 20)	C.G.	S.X.	Please select
0.10	3e-20	99	TaAffx.120063.1.S1_at	CF134093	MADS-box transcription factor TaAGL10	-	4e-7	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.12	3e-20	99	TaAffx.120063.2.S1_s_at	BJ245749	MADS-box transcription factor TaAGL10	-	3e-7	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-2	38	Arabidopsis thaliana	At5g51870	835262	AGL71 (AGAMOUS-LIKE 71)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-5	50	Glycine max	GmaAffx.7093.1.S1_at	BM092487	-	-	3e-21	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please select
0.17	2e-13	75	Hordeum vulgare	Contig24884_at	Contig24884	-	-	1e-1	At5g10140	FLC (FLOWERING LOCUS C)	C.G.	S.X.	Please select
0.43	9e-145	513	Oryza sativa	Os02g0170300	AK109522.1	-	MADS box protein ZMM17	4e-5	At5g51870	AGL71 (AGAMOUS-LIKE 71)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	7e-6	52	Populus trichocarpa	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	6e-3	40	Vitis vinifera	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.50	6e-155	545	Zea mays	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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