Gene omics information

Query gene ID	Ta.27515.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.27515.1.S1_at	BT009189.1	-	-	2e-3	At5g19740	peptidase M28 family protein	S.X.	H.G.	Please select
0.11	12.4	Ta.17884.1.S1_at	CA625288	-	-	4e-6	At4g29735	unknown protein	S.X.	H.G.	Please select
0.06	7.6	Ta.13009.1.S1_at	CA485346	-	-	5e+0	At5g43620	S-locus protein-related	S.X.	H.G.	Please select
0.03	4.7	TaAffx.85507.1.S1_s_at	CA622147	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	S.X.	H.G.	Please select
0.02	3.6	TaAffx.83715.1.S1_at	CA653254	-	-	2e+1	At5g50740	metal ion binding	S.X.	H.G.	Please select
0.02	3.6	TaAffx.58227.1.S1_at	CA621342	-	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.2	99.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
14.4	99.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
13.5	99.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM138185	genotype C25 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.2	97.5	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.9	97.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM111193	genotype F38a developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	7e-53	208	Ta.25927.1.A1_at	CD454513	-	-	5e+0	At2g36916	unknown protein	C.G.	S.X.	Please select
0.27	7e-53	208	Ta.25927.1.A1_x_at	CD454513	-	-	5e+0	At2g36916	unknown protein	C.G.	S.X.	Please select
0.11	2e-13	77	TaAffx.14777.1.A1_at	CA736788	-	-	1e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select
0.13	6e-7	56	Ta.5139.1.S1_at	BT009575.1	-	-	2e-1	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	1e-4	48	Ta.27238.1.S1_at	BT009569.1	-	-	3e-8	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.18	6e-4	46	TaAffx.119974.1.A1_at	BJ249556	-	-	4e+0	At5g47710	C2 domain-containing protein	C.G.	S.X.	Please select
0.04	6e-4	46	Ta.9132.3.S1_s_at	CA640252	-	-	7e-1	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please select
0.03	4e-2	40	Ta.11697.1.A1_at	BQ170614	-	-	4e+0	At5g48657	defense protein-related	C.G.	S.X.	Please select
0.01	5e-1	36	Ta.885.1.S1_at	BJ238471	-	-	1e+1	At5g27810	sequence-specific DNA binding / transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	44	Arabidopsis thaliana	At5g19740	832094	peptidase M28 family protein	F:dipeptidase activity;P:proteolysis;C:vacuole;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	GmaAffx.91080.1.S1_at	CF806805	-	-	2e-2	At5g04980	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.46	4e-83	307	Hordeum vulgare	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	C.G.	S.X.	Please select
0.37	2e-73	278	Oryza sativa	OsAffx.23781.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-5	50	Populus trichocarpa	PtpAffx.22300.1.S1_at	CF228629	hypothetical protein	-	5e-7	At5g19740	peptidase M28 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e-1	34	Vitis vinifera	1613356_at	CF201077.1	-	-	4e-1	At1g62690	unknown protein	C.G.	S.X.	Please select
0.86	0	1806	Zea mays	Zm.10769.1.A1_at	CF624289	glutamate carboxypeptidase 2	-	2e+0	At2g18890	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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