Gene omics information

Query gene ID	Ta.27312.1.S1_x_at
Gene name	Ammonium transporter
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.27312.1.S1_x_at	BT009318.1	Ammonium transporter	-	8e-17	At4g13510	AMT1	S.X.	H.G.	Please select
0.55	76.8	TaAffx.80525.1.A1_at	BG907883	-	-	5e-1	At3g47430	PEX11B	S.X.	H.G.	Please select
0.50	72.4	Ta.25405.2.S1_a_at	CA742742	-	-	4e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	S.X.	H.G.	Please select
0.50	72.4	Ta.21038.1.S1_at	CA601803	Ammonium transporter	-	4e+0	At3g48205	-	S.X.	H.G.	Please select
0.24	30.3	Ta.3910.1.A1_at	BJ255152	-	-	3e+0	At4g33710	pathogenesis-related protein, putative	S.X.	H.G.	Please select
0.24	30.3	Ta.429.1.S1_at	BQ172173	-	-	2e-1	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	99.2	GSM143526	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.7	98.9	GSM143525	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.8	98.7	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.6	98.7	GSM143513	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.2	98.5	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.0	98.5	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.9	98.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.5	98.3	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.5	98.3	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.4	98.2	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	1049	Ta.12823.1.S1_at	CA638403	Ammonium transporter Amt1;1	-	2e-20	At4g13510	AMT1	C.G.	S.X.	Please select
0.58	0	1049	Ta.12823.1.S1_s_at	CA638403	-	-	2e-20	At4g13510	AMT1	C.G.	S.X.	Please select
0.31	3e-96	353	Ta.21038.1.S1_at	CA601803	Ammonium transporter	-	4e+0	At3g48205	-	C.G.	S.X.	Please select
0.02	2e-2	42	Ta.13579.1.A1_at	BQ168489	-	-	2e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	40	Ta.8465.1.S1_at	BQ161936	-	-	2e-2	At2g34180	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	C.G.	S.X.	Please select
0.01	3e-1	38	Ta.17322.1.S1_at	CA619628	-	-	4e+0	At5g39340	AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3)	C.G.	S.X.	Please select
0.02	1e+0	36	TaAffx.99206.1.S1_at	CA727631	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.01	1e+0	36	TaAffx.97931.1.S1_at	BQ801647	-	-	4e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	1e+0	36	TaAffx.86898.1.S1_at	CA599241	-	-	4e+0	At1g49240	ACT8 (ACTIN 8)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	8e-17	89	Arabidopsis thaliana	At4g13510	826983	AMT1	Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	2e-9	65	Glycine max	Gma.9265.1.S1_at	BU551320	-	-	6e-6	At4g28700	AMT1	C.G.	S.X.	Please select
0.54	0	1059	Hordeum vulgare	Contig11711_at	Contig11711	-	-	1e-4	At4g13510	AMT1	C.G.	S.X.	Please select
0.64	0	1201	Oryza sativa	Os04g0509600	AF001505.1	-	-	1e-12	At1g64780	ATAMT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-12	73	Populus trichocarpa	Ptp.5712.1.S1_at	CK113355	ammonium transporter	-	3e-28	At1g64780	ATAMT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-13	75	Vitis vinifera	1610744_at	CF415597	hypothetical protein LOC100258016	-	1e+0	At2g47170	ARF1A1C	C.G.	S.X.	Please select
0.26	7e-114	410	Zea mays	Zm.11141.1.S1_at	AY106810.1	hypothetical protein LOC100272903	-	1e-7	At1g64780	ATAMT1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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