Gene omics information

Query gene ID	Ta.26450.1.A1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.26450.1.A1_s_at	CD490882	-	-	3e-2	At1g70700	TIFY7	S.X.	H.G.	Please select
0.51	73.0	TaAffx.113344.2.S1_at	CA601857	-	-	1e+1	At5g43460	lesion inducing protein-related	S.X.	H.G.	Please select
0.45	65.2	Ta.18865.1.A1_at	CK208332	-	-	5e+0	At2g34850	MEE25 (maternal effect embryo arrest 25)	S.X.	H.G.	Please select
0.45	65.2	TaAffx.119175.1.A1_s_at	BJ285398	-	-	4e+0	At5g65040	senescence-associated protein-related	S.X.	H.G.	Please select
0.42	60.9	TaAffx.64763.1.S1_at	BJ282605	-	-	6e+0	At4g13100	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.41	59.6	Ta.1666.1.S1_a_at	BE443619	-	-	4e-1	At2g32100	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	S.X.	H.G.	Please select
0.40	58.4	Ta.25629.1.S1_at	CD373595	-	-	2e-1	At3g28200	peroxidase, putative	S.X.	H.G.	Please select
0.38	54.7	Ta.25454.1.S1_at	CA638730	-	-	6e-4	At3g58120	BZIP61	S.X.	H.G.	Please select
0.36	51.9	Ta.24985.1.S1_at	CA649858	-	-	2e+1	At5g67190	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.33	46.9	TaAffx.31545.1.S1_at	CA613407	-	-	1e+0	At4g16220	hydrolase, acting on ester bonds	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.2	99.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
30.6	99.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
24.8	99.8	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
19.5	99.7	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
18.6	99.7	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
17.9	99.7	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.1	99.4	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
12.0	99.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
10.7	99.2	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1542	Ta.26450.1.A1_x_at	CD490882	-	-	3e-2	At1g70700	TIFY7	C.G.	S.X.	Please select
0.98	0	1542	Ta.26450.1.A1_at	CD490882	-	-	3e-2	At1g70700	TIFY7	C.G.	S.X.	Please select
0.52	2e-77	289	TaAffx.37884.1.S1_at	BJ265955	-	-	1e+0	At3g62560	GTP-binding protein, putative	C.G.	S.X.	Please select
0.49	2e-61	236	TaAffx.37884.2.A1_at	BJ264591	-	-	2e-2	At1g70700	TIFY7	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.79098.1.S1_at	CA721539	-	-	6e-1	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.65341.1.A1_at	BJ249932	-	-	7e+0	At5g44568	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.57171.1.S1_at	CA635131	-	-	4e+0	At4g17680	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.56743.1.S1_at	CA645298	-	-	3e+0	At3g42180	catalytic/ transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.02	2e+0	34	TaAffx.28490.1.S1_at	CA659490	-	-	1e-28	At3g20362	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-2	40	Arabidopsis thaliana	At1g70700	843407	TIFY7	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.74814.1.S1_at	CA802021	inositol phosphate kinase	-	8e-1	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.05	8e-7	54	Hordeum vulgare	Contig4186_at	Contig4186	-	-	3e-4	At3g17160	unknown protein	C.G.	S.X.	Please select
0.08	4e-15	83	Oryza sativa	Os09g0401300	CB641780	-	ZIM domain containing protein	4e-3	At1g70700	TIFY7	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.5209.1.A1_at	CV257332	-	-	2e+0	At3g55830	EPC1 (ECTOPICALLY PARTING CELLS)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	34	Vitis vinifera	1622886_at	CB348288	hypothetical protein LOC100252460	-	3e-13	At1g52540	protein kinase, putative	C.G.	S.X.	Please select
0.08	3e-9	61	Zea mays	Zm.8344.1.A1_at	CO526131	ZIM motif family protein	-	5e-4	At1g70700	TIFY7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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