CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.2593.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.2593.1.S1_at BJ307314 - - 2e-10 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) S.X. H.G.
0.29 39.2 Ta.7383.1.A1_at CA722162 - - 5e-1 At5g44316 ATP-binding-cassette transporter, putative S.X. H.G.
0.27 35.6 Ta.3070.1.S1_x_at BJ229772 mitogen-activated protein kinase 2 - 7e-27 At5g19010 MPK16 S.X. H.G.
0.26 33.6 TaAffx.42378.1.S1_at BE213259 - - 1e-1 At1g15250 60S ribosomal protein L37 (RPL37A) S.X. H.G.
0.19 22.4 TaAffx.72146.1.S1_at BQ169248 - - 8e-1 At5g20447 unknown protein S.X. H.G.
0.18 21.0 Ta.6142.1.A1_at BQ169906 - - 1e-2 At5g63330 - S.X. H.G.
0.14 15.8 Ta.3183.1.A1_at BJ307037 - - 5e+0 At5g19630 unknown protein S.X. H.G.
0.13 14.6 TaAffx.92436.1.A1_at BJ266428 - - 1e+0 At3g11530 vacuolar protein sorting 55 family protein / VPS55 family protein S.X. H.G.
0.08 9.4 Ta.16511.1.S1_at BQ168702 - - 3e-5 At5g08450 - S.X. H.G.
0.07 8.6 Ta.3516.1.S1_at BJ296772 - - 2e-7 At5g26210 AL4 (ALFIN-LIKE 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.5 99.7 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
15.5 99.6 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
10.8 99.2 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
5.5 97.8 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9 97.3 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
4.8 97.2 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4 96.8 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4 96.8 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
4.2 96.6 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 8e-140 498 Ta.2593.2.S1_at BQ169061 - - 1e-25 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.38 8e-140 498 Ta.2593.2.S1_x_at BQ169061 - - 1e-25 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.30 1e-104 381 TaAffx.51314.1.S1_at CA727605 - - 3e-1 At5g07680 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) C.G. S.X.
0.30 1e-104 381 TaAffx.51314.1.S1_x_at CA727605 - - 3e-1 At5g07680 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) C.G. S.X.
0.20 3e-62 240 TaAffx.9158.1.S1_at CA610004 - - 3e-1 At5g07680 ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80) C.G. S.X.
0.16 2e-54 214 Ta.2593.3.S1_x_at CA665053 - - 4e-1 At4g23980 ARF9 (AUXIN RESPONSE FACTOR 9) C.G. S.X.
0.20 2e-23 111 TaAffx.8950.1.S1_at CA617565 - - 5e-2 At3g04730 IAA16 C.G. S.X.
0.07 1e-5 52 Ta.15664.1.S1_at CA486187 - - 1e-7 At3g61830 ARF18 (AUXIN RESPONSE FACTOR 18) C.G. S.X.
0.02 5e-2 40 Ta.15975.1.S1_at CA502655 - - 7e-1 At5g27606 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-10 67 Arabidopsis thaliana At5g62000 836321 ARF2 (AUXIN RESPONSE FACTOR 2) Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. - - - C.G. S.X.
0.07 3e-4 48 Glycine max Gma.2563.2.S1_at BI316885 - - 4e-4 At2g46530 ARF11 (AUXIN RESPONSE FACTOR 11) C.G. S.X.
0.41 3e-128 458 Hordeum vulgare Contig1664_at Contig1664 - - 5e-25 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.33 1e-84 315 Oryza sativa Os01g0927600 AK072309.1 - AUX/IAA protein family protein 6e-28 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.04 7e-2 40 Populus trichocarpa Ptp.5531.1.S1_at CK088135 - - 3e-21 At1g59750 ARF1 (AUXIN RESPONSE FACTOR 1) C.G. S.X.
0.10 7e-11 67 Vitis vinifera 1611882_at CF512921 hypothetical protein LOC100268072 - 7e-13 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
0.28 3e-60 232 Zea mays Zm.2574.1.A1_at AY104948.1 hypothetical protein LOC100274571 - 6e-2 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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