CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.2554.3.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 60.9 Ta.2554.3.A1_at CA726606 - - 3e-1 At3g13672 seven in absentia (SINA) family protein S.X. H.G.
0.83 93.4 Ta.30947.2.S1_at CA735852 - - 1e+0 At5g02530 RNA and export factor-binding protein, putative S.X. H.G.
0.56 78.6 Ta.22346.2.A1_at CA741140 - - 8e-1 At2g21560 unknown protein S.X. H.G.
0.53 74.9 Ta.8245.2.S1_x_at CA680416 - - 4e+0 At5g13570 DCP2 (DECAPPING 2) S.X. H.G.
0.48 69.0 TaAffx.29314.1.S1_at CA645755 - - 1e+0 At5g10880 tRNA synthetase-related / tRNA ligase-related S.X. H.G.
0.40 58.4 TaAffx.53813.1.S1_at CA688853 - - 5e+0 At4g23432 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.1 99.9 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
15.7 99.6 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
13.0 99.4 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.0 99.4 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
11.1 99.3 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.1 99.0 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.9 99.0 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
7.7 98.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.7 98.7 GSM298060 Crown tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.0 98.5 GSM298093 Crown tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 4e-145 513 Ta.2554.1.S1_x_at CK210349 - - 1e-46 At5g26360 chaperonin, putative C.G. S.X.
0.58 4e-71 268 Ta.2554.2.S1_at CD893825 - - 3e+0 At3g61260 DNA-binding family protein / remorin family protein C.G. S.X.
0.06 1e-6 54 TaAffx.105261.1.S1_at CA737104 - - 2e-4 At2g40980 - C.G. S.X.
0.07 5e-6 52 TaAffx.78211.1.S1_at CA735828 - - 6e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.05 5e-6 52 TaAffx.77706.1.S1_at CA743807 - - 4e+0 At5g50030 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.05 5e-6 52 TaAffx.77645.1.S1_at CA744660 - - 5e-2 At3g52525 OFP6 (OVATE FAMILY PROTEIN 6) C.G. S.X.
0.07 5e-6 52 TaAffx.50531.1.S1_at CA739081 - - 2e+0 At4g30690 translation initiation factor 3 (IF-3) family protein C.G. S.X.
0.06 5e-6 52 TaAffx.50624.1.S1_at CA737700 - - 1e-1 At3g51800 ATG2 C.G. S.X.
0.07 5e-6 52 TaAffx.50318.1.S1_at CA742779 - - 3e+0 At3g25400 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO - - - C.G. S.X.
0.06 4e-4 46 Glycine max GmaAffx.89678.1.A1_s_at CK606714 CDNA for glutamine synthetase (3' region) - 9e-2 At1g65352 - C.G. S.X.
0.36 9e-114 408 Hordeum vulgare Contig9215_at Contig9215 - - 8e-16 At5g26360 chaperonin, putative C.G. S.X.
0.03 2e-6 54 Oryza sativa Os02g0247200 AK102024.1 - T-complex protein 1, gamma subunit (TCP-1-gamma)(CCT-gamma) (Matricin) 6e-73 At5g26360 chaperonin, putative C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.217651.1.S1_at pmrna33002 hypothetical protein - 1e+0 At1g50530 - C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1618045_at CF216119 hypothetical protein LOC100243133 - 7e-2 At1g69760 unknown protein C.G. S.X.
0.05 1e-7 56 Zea mays Zm.16810.1.A1_at CF053948 T-complex protein 1 subunit gamma - 3e-32 At5g26360 chaperonin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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