Gene omics information

Query gene ID	Ta.25402.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.2	Ta.25402.1.S1_at	CK160504	-	-	4e-42	At1g11430	plastid developmental protein DAG, putative	S.X.	H.G.	Please select
0.75	89.8	Ta.12083.1.A1_at	CD885615	-	-	1e+0	At5g17470	calmodulin-related protein, putative	S.X.	H.G.	Please select
0.63	83.1	Ta.9210.1.S1_a_at	CD453542	-	-	1e-1	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	S.X.	H.G.	Please select
0.56	78.6	TaAffx.105292.1.S1_at	CA736604	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.55	76.8	TaAffx.53324.1.S1_x_at	CA693604	-	-	9e+0	At4g09070	-	S.X.	H.G.	Please select
0.52	73.7	Ta.494.1.S1_at	CK155824	-	-	5e-30	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	S.X.	H.G.	Please select
0.50	72.4	Ta.7649.1.S1_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select
0.44	64.5	Ta.1517.1.S1_at	CA629173	porphobilinogen deaminase	-	1e-5	At5g08280	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	S.X.	H.G.	Please select
0.40	58.4	Ta.7649.1.S1_x_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.1	99.5	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
13.9	99.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.9	99.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.6	99.4	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.9	99.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.5	98.9	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.9	98.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-158	559	Ta.26562.1.A1_at	CD491221	-	-	3e-42	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.07	5e-11	69	TaAffx.131459.1.S1_at	CA701264	-	-	2e+0	At4g20020	unknown protein	C.G.	S.X.	Please select
0.09	5e-5	50	Ta.7794.1.S1_x_at	BQ160699	-	-	7e-19	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.02	1e-2	42	Ta.938.2.S1_x_at	CK216073	-	-	9e-2	At1g71950	identical protein binding / serine-type endopeptidase	C.G.	S.X.	Please select
0.02	1e-2	42	Ta.938.1.S1_x_at	CK216828	-	-	4e-2	At1g71950	identical protein binding / serine-type endopeptidase	C.G.	S.X.	Please select
0.03	1e-2	42	Ta.938.3.S1_x_at	AJ615736	-	-	1e+0	At1g17510	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	42	Ta.28680.1.S1_at	CA695344	-	-	4e+0	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	C.G.	S.X.	Please select
0.03	1e-2	42	Ta.18772.1.S1_at	CA641994	-	-	6e-13	At3g06790	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.06	4e-2	40	Ta.23199.1.S1_at	CA634433	-	-	2e-43	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	4e-42	173	Arabidopsis thaliana	At1g11430	837685	plastid developmental protein DAG, putative	F:unknown;P:unknown;C:chloroplast stroma, chloroplast, chloroplast envelope;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	3e-65	250	Glycine max	Gma.2659.1.S1_at	CD399064	-	-	9e-37	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.84	0	1425	Hordeum vulgare	Contig7509_at	Contig7509	-	-	1e-51	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.32	1e-161	571	Oryza sativa	Os08g0139100	AK099590.1	-	DAG protein, chloroplast precursor	7e-44	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	1e-43	178	Populus trichocarpa	Ptp.5741.1.S1_at	AJ770518	-	-	5e-66	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	2e-69	262	Vitis vinifera	1620736_a_at	CD714912	hypothetical protein LOC100255654	-	3e-39	At1g11430	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.11	5e-6	52	Zea mays	Zm.10116.1.A1_at	AY108928.1	-	-	5e+0	At3g06790	plastid developmental protein DAG, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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