Gene omics information

Query gene ID	Ta.25380.1.A1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.25380.1.A1_x_at	CD453533	-	-	5e-3	At1g65720	unknown protein	S.X.	H.G.	Please select
0.61	82.0	TaAffx.81795.1.S1_at	CA644276	-	-	2e-4	At5g57320	villin, putative	S.X.	H.G.	Please select
0.33	46.9	Ta.14195.3.S1_x_at	CA640695	-	-	4e+0	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.33	46.9	Ta.6867.3.A1_a_at	BJ228637	-	-	1e+0	At1g17147	-	S.X.	H.G.	Please select
0.31	42.7	Ta.3584.2.S1_a_at	CA601548	-	-	1e+0	At5g25102	unknown protein	S.X.	H.G.	Please select
0.20	24.0	Ta.6968.2.S1_a_at	CA604796	-	-	2e-33	At5g03520	ATRAB8C	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.8	97.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1043	Ta.25380.1.A1_at	CD453533	-	-	5e-3	At1g65720	unknown protein	C.G.	S.X.	Please select
0.19	3e-44	178	Ta.25380.2.S1_at	CA652259	-	-	4e+0	At5g66470	GTP binding / RNA binding	C.G.	S.X.	Please select
0.47	7e-33	141	Ta.10792.1.A1_at	BQ166580	-	-	2e-1	At3g53630	unknown protein	C.G.	S.X.	Please select
0.03	5e-3	42	Ta.6668.1.A1_at	CA684110	-	-	2e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.03	8e-2	38	Ta.13622.1.S1_at	BQ801759	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.27430.1.S1_at	CA676821	-	-	8e-1	At5g64400	-	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.128414.13.S1_at	BE213298	-	-	0	Atcg00490	-	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.128414.176.S1_x_at	CA656046	-	-	2e-119	Atcg00490	-	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.128414.41.S1_at	BE213288	-	-	0	Atcg00490	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-3	42	Arabidopsis thaliana	At1g65720	842883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-2	40	Glycine max	Gma.17839.1.S1_at	BI316016	-	-	7e-12	At5g64400	-	C.G.	S.X.	Please select
0.50	9e-148	521	Hordeum vulgare	Contig15231_at	Contig15231	-	-	7e-16	At5g24710	-	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	OsAffx.17147.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-1	36	Populus trichocarpa	PtpAffx.223395.1.S1_x_at	pmrna41374	-	-	3e+0	At1g68585	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1609989_at	CF415187	-	-	2e+1	At4g08190	Ras-related GTP-binding protein, putative	C.G.	S.X.	Please select
0.04	5e-4	44	Zea mays	Zm.12118.1.A1_at	BQ034341	hypothetical protein LOC100277272	-	3e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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