Gene omics information

Query gene ID	Ta.25139.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.25139.1.S1_at	CA615602	-	-	7e+0	At5g17150	-	S.X.	H.G.	Please select
0.51	73.0	TaAffx.128616.1.S1_x_at	CD924685	-	-	1e-1	At3g16700	fumarylacetoacetate hydrolase family protein	S.X.	H.G.	Please select
0.39	56.1	Ta.26199.1.S1_at	CD908886	-	-	3e+0	At2g13463	unknown protein	S.X.	H.G.	Please select
0.38	54.7	Ta.1569.2.S1_x_at	CA601989	-	-	2e+0	At2g03170	ASK14 (ARABIDOPSIS SKP1-LIKE 14)	S.X.	H.G.	Please select
0.38	54.7	Ta.25854.1.S1_at	CD453706	-	-	5e-15	At1g05940	CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)	S.X.	H.G.	Please select
0.37	53.0	Ta.9642.2.S1_a_at	CA662794	-	-	4e+0	At4g16360	AMP-activated protein kinase	S.X.	H.G.	Please select
0.36	51.9	Ta.13624.2.S1_x_at	CA647589	-	-	1e+0	At5g27430	signal peptidase subunit family protein	S.X.	H.G.	Please select
0.34	48.1	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	S.X.	H.G.	Please select
0.34	48.1	Ta.13308.2.S1_a_at	CA646875	-	-	8e-11	At3g29090	pectinesterase family protein	S.X.	H.G.	Please select
0.34	48.1	TaAffx.83918.1.S1_at	CA648239	-	-	1e-9	At5g06180	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
10.9	99.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1	96.4	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-56	220	TaAffx.117625.1.S1_at	CA614556	-	-	4e-2	At1g75130	CYP721A1	C.G.	S.X.	Please select
0.10	2e-6	54	TaAffx.25581.1.S1_at	CA698146	-	-	1e+0	At3g54120	reticulon family protein (RTNLB12)	C.G.	S.X.	Please select
0.03	2e-3	44	Ta.7793.1.A1_at	BQ170170	-	-	5e+0	At4g33467	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	40	TaAffx.36712.1.S1_at	BJ318109	-	-	3e-5	At2g40810	AtATG18c	C.G.	S.X.	Please select
0.03	3e-2	40	TaAffx.3534.1.A1_at	BJ308123	-	-	1e+0	At4g28730	glutaredoxin family protein	C.G.	S.X.	Please select
0.03	3e-2	40	Ta.6481.1.A1_at	BJ306483	-	-	7e-5	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.02	3e-2	40	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	C.G.	S.X.	Please select
0.02	3e-2	40	Ta.10252.2.S1_a_at	BJ250789	-	-	1e-1	At5g63330	-	C.G.	S.X.	Please select
0.03	1e-1	38	TaAffx.82026.1.S1_at	CA678645	-	-	4e+0	At5g48610	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e+0	32	Arabidopsis thaliana	At5g17150	831579	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-10	65	Glycine max	GmaAffx.74241.1.S1_at	BI786740	-	-	1e-6	At1g75130	CYP721A1	C.G.	S.X.	Please select
0.56	5e-166	583	Hordeum vulgare	EBro08_SQ011_H01_at	EBro08_SQ011_H01	-	-	5e+0	At5g18970	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.52	6e-70	266	Oryza sativa	Os05g0405600	CF321959	-	Cytochrome P450 family protein	8e+0	Atcg00560	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-3	44	Populus trichocarpa	PtpAffx.216390.1.S1_at	pmrna31143	cytochrome P450	-	1e-1	At1g75130	CYP721A1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-2	38	Vitis vinifera	1609184_at	CB342124	hypothetical protein LOC100254366	-	7e-6	At3g14640	CYP72A10	C.G.	S.X.	Please select
0.03	5e-2	38	Zea mays	Zm.2668.1.A1_at	CB334210	hypothetical protein LOC100193351	-	4e+0	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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