Gene omics information

Query gene ID	Ta.2407.2.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	91.3	Ta.2407.2.A1_at	CA623177	-	-	3e-2	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	S.X.	H.G.	Please select
0.75	89.8	Ta.1989.1.S1_x_at	CA674427	-	-	7e-6	At2g47400	CP12-1	S.X.	H.G.	Please select
0.73	89.1	Ta.5227.1.S1_x_at	BE213258	-	-	2e-1	At4g23890	unknown protein	S.X.	H.G.	Please select
0.71	88.0	Ta.5227.1.S1_at	BE213258	-	-	2e-1	At4g23890	unknown protein	S.X.	H.G.	Please select
0.67	86.3	Ta.3788.1.A1_at	BJ253790	-	-	2e+0	At1g30473	metal ion binding	S.X.	H.G.	Please select
0.64	83.6	Ta.27646.1.S1_at	CK211847	-	-	7e-10	At1g61520	LHCA3	S.X.	H.G.	Please select
0.61	82.0	Ta.1989.1.S1_a_at	CA674427	-	-	7e-6	At2g47400	CP12-1	S.X.	H.G.	Please select
0.59	79.8	TaAffx.120874.1.S1_x_at	BM136337	-	-	4e-3	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	S.X.	H.G.	Please select
0.58	79.2	Ta.20639.3.S1_x_at	CA635230	-	-	8e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	S.X.	H.G.	Please select
0.58	79.2	Ta.20639.3.S1_a_at	CA635230	-	-	8e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.9	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
8.5	98.9	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.4	98.6	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
7.4	98.6	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.3	98.6	GSM246390	SB62_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
6.6	98.3	GSM246396	SB57_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.2	97.5	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.1	97.5	GSM246397	SB57_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.0	97.4	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	634	Ta.2407.1.S1_a_at	BE490082	-	-	7e-1	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	C.G.	S.X.	Please select
0.45	0	634	Ta.2407.1.S1_x_at	BE490082	-	-	7e-1	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	C.G.	S.X.	Please select
0.03	1e-1	38	TaAffx.35563.1.A1_at	CK163739	-	-	2e+0	At5g58412	-	C.G.	S.X.	Please select
0.02	1e-1	38	Ta.5879.1.S1_at	AJ615290	-	-	6e-7	At1g12920	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.83889.1.S1_at	CA648865	-	-	2e-2	At5g06360	ribosomal protein S8e family protein	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.64472.1.A1_at	BJ296174	-	-	4e-1	At1g70470	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	TaAffx.115935.1.S1_x_at	AY596267.1	polyphenol oxidase /// polyphenol oxidase	-	2e-1	At3g08630	-	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.6561.1.S1_at	CD905008	-	-	8e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.3703.2.S1_s_at	BJ246711	-	-	2e-2	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-2	40	Arabidopsis thaliana	At1g76080	843940	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-9	63	Glycine max	Gma.1277.1.S1_at	BM094440	-	-	3e-12	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	C.G.	S.X.	Please select
0.09	8e-4	44	Hordeum vulgare	Contig4855_s_at	Contig4855	-	-	8e+0	At2g39518	-	C.G.	S.X.	Please select
0.32	5e-79	295	Oryza sativa	Os.12100.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-3	44	Populus trichocarpa	Ptp.4530.1.A1_at	CV271823	hypothetical protein	-	3e-14	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	32	Vitis vinifera	1612753_at	CF205714.1	hypothetical protein LOC100260428	-	3e-1	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	C.G.	S.X.	Please select
0.32	6e-72	270	Zea mays	Zm.2137.1.S1_at	CO529492	electron transporter/ thiol-disulfide exchange intermediate	-	7e-7	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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