Gene omics information

Query gene ID	Ta.2392.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.77	90.8	Ta.581.1.S1_at	AY123417.1	hypothetical LOC543355	-	1e-7	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.71	88.0	Ta.581.2.S1_a_at	CD862705	hypothetical LOC543355	-	9e-3	At2g35370	GDCH	S.X.	H.G.	Please select
0.63	83.1	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	S.X.	H.G.	Please select
0.57	79.2	Ta.4255.2.S1_x_at	CA627750	-	-	4e-3	At1g75690	chaperone protein dnaJ-related	S.X.	H.G.	Please select
0.46	66.8	Ta.3581.3.S1_x_at	CA598998	-	-	4e-7	At1g31330	PSAF (photosystem I subunit F)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	99.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.1	99.0	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	3e-134	478	Ta.2392.2.S1_at	CA659763	-	-	2e+1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.58	4e-100	365	Ta.2392.3.A1_at	CK216218	-	-	5e+0	At5g57400	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	40	TaAffx.261.1.S1_at	BQ169227	-	-	6e+0	At3g54940	-	C.G.	S.X.	Please select
0.03	4e-1	36	TaAffx.66072.1.S1_at	CA600692	-	-	4e+0	At3g29560	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.8602.1.S1_x_at	CA678271	-	-	2e-4	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.8602.3.S1_a_at	CK203338	-	-	1e-10	At1g10010	AAP8	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.8449.1.A1_at	BQ161911	-	-	1e-6	At5g65980	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.03	4e-1	36	Ta.29372.1.S1_at	CK161766	-	-	5e+0	At1g78030	-	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.91997.1.A1_at	BJ287077	-	-	9e-1	At5g12040	carbon-nitrogen hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g07450	819933	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL77Contig2_at	PsAffx.CL77Contig2	-	-	3e+0	At3g32160	unknown protein	C.G.	S.X.	Please select
0.64	9e-158	555	Hordeum vulgare	Contig3657_s_at	Contig3657	-	-	5e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.41	8e-75	282	Oryza sativa	Os03g0765900	AK058858.1	-	Conserved hypothetical protein	1e+0	At1g72430	auxin-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.218056.1.S1_at	pmrna33575	hypothetical protein	-	1e+1	At3g53900	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+1	28	Vitis vinifera	1622190_at	CD799020	-	-	4e+0	At3g12090	TET6 (TETRASPANIN6)	C.G.	S.X.	Please select
0.29	1e-63	242	Zea mays	Zm.7003.1.A1_at	BM380958	plastoquinol-plastocyanin reductase	-	7e+0	At5g11990	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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