Gene omics information

Query gene ID	Ta.23822.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	S.X.	H.G.	Please select
0.91	98.2	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please select
0.91	98.2	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	S.X.	H.G.	Please select
0.83	93.4	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	S.X.	H.G.	Please select
0.77	90.8	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	S.X.	H.G.	Please select
0.77	90.8	Ta.23042.1.S1_x_at	BE517350	-	-	1e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.4	99.9	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
48.2	99.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
47.7	99.9	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
46.4	99.9	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
35.7	99.9	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
35.7	99.9	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
24.0	99.8	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
23.0	99.8	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
21.9	99.8	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	1084	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	C.G.	S.X.	Please select
0.33	5e-169	595	TaAffx.5060.1.S1_at	CA724022	-	-	1e+0	At2g30766	unknown protein	C.G.	S.X.	Please select
0.22	2e-82	307	TaAffx.107391.1.S1_at	CA700505	-	-	1e+0	At3g57390	AGL18	C.G.	S.X.	Please select
0.35	6e-33	143	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	C.G.	S.X.	Please select
0.12	1e-24	115	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.21	5e-18	93	TaAffx.57561.1.S1_at	CA627082	-	-	4e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.10	5e-15	83	TaAffx.30325.1.S1_at	CA626164	-	-	1e+1	At5g23030	TET12 (TETRASPANIN12)	C.G.	S.X.	Please select
0.05	4e-6	54	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	C.G.	S.X.	Please select
0.03	2e-5	52	TaAffx.81928.1.S1_at	CA699612	-	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-2	40	Arabidopsis thaliana	At2g36026	6241209	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-4	48	Glycine max	GmaAffx.51195.1.S1_at	BM887103	-	-	2e-1	At1g70700	TIFY7	C.G.	S.X.	Please select
0.04	3e-2	40	Hordeum vulgare	Contig7389_at	Contig7389	-	-	1e-2	At3g26180	CYP71B20	C.G.	S.X.	Please select
0.02	5e-4	48	Oryza sativa	OsAffx.2585.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.19128.1.S1_at	AJ779721	hypothetical protein	-	3e+0	At5g48420	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	5e+0	32	Vitis vinifera	1621363_at	CA809467	hypothetical protein LOC100250687	-	5e-4	At1g13080	CYP71B2 (CYTOCHROME P450 71B2)	C.G.	S.X.	Please select
0.48	7e-114	410	Zea mays	Zm.5558.1.A1_at	AY072298.1	-	-	3e-1	At3g20100	CYP705A19	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage