Gene omics information

Query gene ID	Ta.23803.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	98.7	Ta.23803.1.A1_at	BJ318318	-	-	9e-46	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	S.X.	H.G.	Please select
0.38	54.7	Ta.7272.2.S1_a_at	BJ260859	auxin amidohydrolase	-	1e-6	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	S.X.	H.G.	Please select
0.35	49.8	TaAffx.11930.1.S1_s_at	CA639901	-	-	3e-5	At2g30330	GCN5L1 family protein	S.X.	H.G.	Please select
0.35	49.8	Ta.10397.1.S1_at	BQ169015	-	-	2e+0	At2g20390	unknown protein	S.X.	H.G.	Please select
0.34	48.1	Ta.9195.3.S1_x_at	CA648843	-	-	3e+0	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.33	46.9	Ta.4798.1.S1_at	CK163023	Vacuolar proton ATPase subunit H	-	2e-8	At3g42050	vacuolar ATP synthase subunit H family protein	S.X.	H.G.	Please select
0.31	42.7	Ta.12514.1.A1_s_at	CK153067	-	-	2e-7	At4g17270	Mo25 family protein	S.X.	H.G.	Please select
0.31	42.7	Ta.6864.1.S1_a_at	BQ238104	-	-	3e+0	At5g55507	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.30	40.9	Ta.6574.1.S1_at	BJ284024	-	-	3e+0	At4g04632	ATP binding / protein kinase	S.X.	H.G.	Please select
0.29	39.2	Ta.297.1.S1_at	BJ241999	-	-	3e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	98.0	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM250884	Tc_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-97	357	Ta.6819.1.S1_at	BJ323070	-	-	1e-5	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.39	6e-84	311	Ta.17930.1.S1_at	CA626024	-	-	2e-17	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.23	6e-41	169	Ta.96.1.S1_at	M28059.1	ubiquitin carrier protein	-	2e-37	At1g63800	UBC5 (ubiquitin-conjugating enzyme 5)	C.G.	S.X.	Please select
0.17	3e-33	143	TaAffx.5108.1.S1_at	CA721648	-	-	2e+0	At3g56790	RNA splicing factor-related	C.G.	S.X.	Please select
0.13	1e-23	111	TaAffx.112266.1.S1_x_at	CA625434	-	-	3e-8	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	C.G.	S.X.	Please select
0.13	1e-23	111	TaAffx.112266.1.S1_at	CA625434	-	-	3e-8	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	C.G.	S.X.	Please select
0.02	5e-1	36	TaAffx.56723.1.A1_x_at	CA645697	-	-	5e+0	At4g20470	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.9502.1.A1_a_at	BJ310376	-	-	4e-1	At4g18940	cyclic phosphodiesterase, putative	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.9502.1.A1_x_at	BJ310376	-	-	4e-1	At4g18940	cyclic phosphodiesterase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	9e-46	184	Arabidopsis thaliana	At1g63800	842683	UBC5 (ubiquitin-conjugating enzyme 5)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	6e-54	212	Glycine max	GmaAffx.88036.1.A1_at	BU548882	-	-	7e-85	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.77	0	1457	Hordeum vulgare	Contig5962_at	Contig5962	-	-	2e-40	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.25	1e-172	607	Oryza sativa	Os10g0447100	AK120481.1	-	Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitincarrier protein 5)	2e-34	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	4e-58	226	Populus trichocarpa	PtpAffx.34376.1.S1_at	CV273296	hypothetical protein	-	2e-86	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	3e-64	244	Vitis vinifera	1618265_at	CF403167	hypothetical protein LOC100244806	-	8e-86	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select
0.50	4e-151	533	Zea mays	Zm.14916.1.A1_at	AI978019	ubiquitin-conjugating enzyme E2-21 kDa 1	-	2e-25	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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