Gene omics information

Query gene ID	Ta.23474.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.1	Ta.23474.2.S1_at	BJ242706	-	-	1e+0	At5g42410	auxin-responsive family protein	S.X.	H.G.	Please select
0.56	78.6	TaAffx.28276.1.S1_at	BQ236244	-	-	2e+0	At4g33660	unknown protein	S.X.	H.G.	Please select
0.47	67.9	Ta.9277.1.S1_at	CA670564	-	-	8e-4	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	S.X.	H.G.	Please select
0.46	66.8	Ta.15546.1.S1_at	CA724976	-	-	1e+1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	S.X.	H.G.	Please select
0.44	64.5	Ta.22746.1.S1_at	CA684245	-	-	8e+0	At3g07460	unknown protein	S.X.	H.G.	Please select
0.33	46.9	Ta.7012.3.A1_x_at	CA674682	-	-	8e-2	At1g79870	oxidoreductase family protein	S.X.	H.G.	Please select
0.32	44.4	TaAffx.50279.1.S1_at	CA743347	-	-	1e+1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	S.X.	H.G.	Please select
0.27	35.6	Ta.17892.1.S1_at	BJ217605	-	-	8e-4	At3g54360	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.23	29.0	TaAffx.14213.2.S1_at	CK207780	-	-	5e-6	At1g70900	unknown protein	S.X.	H.G.	Please select
0.16	18.2	Ta.3329.1.S1_at	BJ210428	-	-	8e-1	At4g23410	TET5 (TETRASPANIN5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	99.4	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.3	99.2	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.0	98.5	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.9	98.0	GSM143491	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.9	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1	97.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.1	97.5	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.9	97.3	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1057	Ta.23474.2.S1_x_at	BJ242706	-	-	1e+0	At5g42410	auxin-responsive family protein	C.G.	S.X.	Please select
0.43	3e-115	414	Ta.23474.1.S1_at	CN012706	-	-	5e+0	At3g46666	unknown protein	C.G.	S.X.	Please select
0.54	1e-108	393	Ta.23474.3.S1_x_at	AJ611911	-	-	7e-1	At1g02210	regulator of shoot apical meristem-related	C.G.	S.X.	Please select
0.35	9e-57	220	Ta.26916.1.A1_at	CD452411	-	-	3e+0	At5g53690	unknown protein	C.G.	S.X.	Please select
0.37	5e-46	184	Ta.11553.1.A1_at	BQ170343	-	-	3e+0	At2g04039	unknown protein	C.G.	S.X.	Please select
0.24	3e-44	178	Ta.25949.2.S1_at	BQ605833	-	-	4e+0	At5g04850	VPS60.2	C.G.	S.X.	Please select
0.34	1e-43	176	TaAffx.79089.1.S1_at	CA721767	-	-	3e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	C.G.	S.X.	Please select
0.17	6e-30	131	TaAffx.91703.1.A1_x_at	BJ306043	-	-	3e+0	At5g63670	SPT42 (SPT4 HOMOLOG 2)	C.G.	S.X.	Please select
0.19	9e-23	107	Ta.10549.2.A1_at	BQ165963	-	-	5e-2	At3g27620	AOX1C	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g42410	834247	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	Gma.14301.1.S1_at	CA852529	-	-	7e-1	At4g17270	Mo25 family protein	C.G.	S.X.	Please select
0.28	3e-24	111	Hordeum vulgare	HA04j23r_at	HA04j23r	-	-	1e+1	At5g58990	unknown protein	C.G.	S.X.	Please select
0.20	1e-11	71	Oryza sativa	OsAffx.9044.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.95086.1.A1_at	CV260343	hypothetical protein	-	9e-4	At1g19320	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	34	Vitis vinifera	1608216_at	CF513968	-	-	4e+0	At5g20740	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.11909.1.A1_at	BM381708	-	-	4e+0	At5g42146	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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