CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.23142.5.S1_x_at

Gene name low molecular weight glutenin

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.9 Ta.23142.5.S1_x_at CD868513 low molecular weight glutenin - 4e-2 At2g30590 WRKY21 S.X. H.G.
0.77 90.8 Ta.12643.5.S1_x_at BJ235708 - - 1e+0 At2g40995 - S.X. H.G.
0.67 86.3 Ta.30756.1.S1_x_at AB119006.1 low molecular weight glutenin subunit - 8e-1 At5g62575 unknown protein S.X. H.G.
0.60 81.0 Ta.30782.4.S1_at BJ240325 Gamma-gliadin - 3e+0 At5g42420 transporter-related S.X. H.G.
0.50 72.4 Ta.69.2.S1_x_at CD888551 15kDa grain softness protein /// 15kDa grain softness protein - 1e+0 At3g61040 CYP76C7 S.X. H.G.
0.33 46.9 Ta.23141.2.S1_at CD905119 Alpha-amylase inhibitor 0.19 - 6e+0 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
129.6 100.0 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
119.6 100.0 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
117.4 100.0 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
0.4 56.9 GSM111208 genotype F36 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
0.3 52.1 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
0.2 46.5 GSM138137 Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
0.1 39.8 GSM111235 genotype F44 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
0.0 30.7 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
0.0 30.7 GSM111223 genotype H5 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
0.0 30.7 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 797 Ta.160.1.S1_x_at U86028.1 pre-gamma-gliadin B-I - 7e-1 At5g62575 unknown protein C.G. S.X.
0.64 0 757 TaAffx.128418.1.S1_x_at X51759.1 Low-molecular-weight glutenin storage protein - 6e-1 At3g17350 unknown protein C.G. S.X.
0.53 0 708 Ta.160.2.A1_at M11336.1 Pre-gamma-gliadin B-I - 6e-1 At5g62575 unknown protein C.G. S.X.
0.61 0 708 Ta.160.2.S1_x_at M11336.1 pre-gamma-gliadin B-I - 6e-1 At5g62575 unknown protein C.G. S.X.
0.61 0 702 Ta.131.1.S1_at BE430809 low-molecular-weight glutenin storage protein - 7e-1 At3g46613 RTFL4 (ROTUNDIFOLIA LIKE 4) C.G. S.X.
0.61 1e-175 617 Ta.14625.2.S1_x_at BQ806669 - - 2e-1 At5g18550 nucleic acid binding / zinc ion binding C.G. S.X.
0.51 4e-166 585 Ta.14625.1.S1_x_at BJ242520 lmw-gs - 3e+0 At3g20865 AGP40 (arabinogalactan-protein 40) C.G. S.X.
0.39 3e-89 329 Ta.23142.8.S1_x_at BJ235564 low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low molecular weight glutenin /// low-molecular-weight glutenin storage protein - 2e-1 At1g74055 unknown protein C.G. S.X.
0.26 1e-88 327 Ta.160.3.A1_x_at BQ247253 Alpha/beta-gliadin precursor - 8e+0 At4g33450 MYB69 (MYB DOMAIN PROTEIN 69) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-2 40 Arabidopsis thaliana At2g30590 817609 WRKY21 Encodes WRKY DNA-binding protein 21 (WRKY21). - - - C.G. S.X.
0.03 6e-2 40 Glycine max HgAffx.6386.1.S1_at CB825825 - - 6e-2 At2g22080 unknown protein C.G. S.X.
0.54 3e-69 262 Hordeum vulgare Contig540_x_at Contig540 - - 5e-1 At5g53590 auxin-responsive family protein C.G. S.X.
0.03 1e-3 46 Oryza sativa Os04g0112400 9632.m00121 - - 3e+0 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.70114.1.A1_at CV231521 - - 7e-8 At4g36870 BLH2 (BEL1-LIKE HOMEODOMAIN 2) C.G. S.X.
0.03 8e-1 34 Vitis vinifera 1614311_at CF516097 hypothetical protein LOC100264243 - 2e-6 At1g15780 unknown protein C.G. S.X.
0.02 3e-1 36 Zea mays ZmAffx.786.1.A1_at AI759096 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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