Gene omics information

Query gene ID	Ta.23107.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.23107.1.S1_a_at	CK156982	-	-	1e-51	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.91	98.2	Ta.12803.1.S1_x_at	CA674406	-	-	3e-5	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	S.X.	H.G.	Please select
0.61	82.0	Ta.24916.3.S1_x_at	CA630515	-	-	8e-2	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select
0.61	82.0	Ta.24916.2.S1_x_at	CK164288	-	-	4e-4	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select
0.60	81.0	Ta.24916.2.S1_at	CK164288	-	-	4e-4	At4g21105	cytochrome-c oxidase/ electron carrier	S.X.	H.G.	Please select
0.47	67.9	Ta.27578.1.S1_at	CN013235	-	-	1e-43	At3g02090	mitochondrial processing peptidase beta subunit, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	96.1	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM111175	genotype G30 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.0	89.7	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.0	89.7	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	0	642	Ta.6968.1.S1_at	CK196001	-	-	1e-45	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.35	4e-163	575	Ta.23107.3.S1_a_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.35	4e-163	575	Ta.23107.3.S1_x_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.34	1e-116	420	TaAffx.23406.1.S1_at	CA735527	-	-	9e-4	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.33	7e-103	375	Ta.6968.2.S1_a_at	CA604796	-	-	2e-33	At5g03520	ATRAB8C	C.G.	S.X.	Please select
0.31	9e-87	321	Ta.17113.1.S1_at	CA617930	-	-	3e-48	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.17	3e-62	240	Ta.6968.3.S1_x_at	CA630440	-	-	1e-12	At5g03520	ATRAB8C	C.G.	S.X.	Please select
0.17	3e-62	240	Ta.6968.3.S1_at	CA630440	-	-	1e-12	At5g03520	ATRAB8C	C.G.	S.X.	Please select
0.05	1e-14	81	TaAffx.83759.1.S1_at	CA651862	-	-	2e-2	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	1e-51	204	Arabidopsis thaliana	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	3e-75	284	Glycine max	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.78	0	1562	Hordeum vulgare	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.52	0	801	Oryza sativa	Os05g0461300	AK111917.1	-	Ras-related protein Rab-8A (Oncogene c-mel)	4e-48	At3g53610	ATRAB8	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	6e-64	246	Populus trichocarpa	PtpAffx.12284.1.A1_s_at	CV236490	hypothetical protein	-	6e-81	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-66	252	Vitis vinifera	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.36	1e-157	555	Zea mays	Zm.2826.1.S1_at	BM333443	hypothetical protein LOC100192989	-	2e-62	At3g46060	ATRAB8A	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage